Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,041,247 – 4,041,345 |
Length | 98 |
Max. P | 0.697900 |
Location | 4,041,247 – 4,041,345 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.56 |
Mean single sequence MFE | -23.58 |
Consensus MFE | -16.52 |
Energy contribution | -16.43 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.05 |
Mean z-score | -1.27 |
Structure conservation index | 0.70 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4041247 98 - 27905053 CA-CGA---AACCCACCAUAA------------------GCCACAGCCGCAUCAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAGCUUGCGC ..-...---.........(((------------------((....(((((..(((((......)))))....)))))(((((....(((((.......))))))))))....)))))... ( -23.40) >DroPse_CAF1 28112 91 - 1 CA-CAA---------CCGC-A------------------ACCGCAUCCGCAUUAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAACUUGCGC ..-...---------.(((-(------------------(((((...((((((...........))))))..)))).(((((....(((((.......))))))))))......))))). ( -22.40) >DroEre_CAF1 29514 95 - 1 CA-CGAUGUAGCGCACCAUAA------------------------GCCGCAUCAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAGCUUGCGC ..-.((((..((.........------------------------))..))))((((......))))(((((((((.(((((....(((((.......)))))))))).)))..)))))) ( -27.10) >DroYak_CAF1 47709 116 - 1 CA-CGA---AACUCACCAUAAACCGCAGCCACAGCCACAGCCACAGCCGCAUCAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAGCUUGCGC ..-...---..............((((((....(((((.(((((.((.(((....)))..))...))).)).)))))(((((....(((((.......))))))))))....)).)))). ( -31.20) >DroAna_CAF1 31687 90 - 1 CAACCC---UAACCACAAUA--------------------CGACAACCACAUCAUUGUUAGCCCA-------GUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAACUUGCGC ......---...........--------------------.(((((........))))).((...-------.(((.(((((....(((((.......)))))))))).)))....)).. ( -15.00) >DroPer_CAF1 28503 91 - 1 CA-CAA---------CCGC-A------------------ACCGCAUCCGCAUUAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAACUUGCGC ..-...---------.(((-(------------------(((((...((((((...........))))))..)))).(((((....(((((.......))))))))))......))))). ( -22.40) >consensus CA_CGA___AAC_CACCAUAA___________________CCACAGCCGCAUCAUUGUUAGCCCAGUGCGCAGUGGCAGCCAACACUCAUGUUUAAAUUAUGAUGGCUUCUAACUUGCGC ...............................................((((.....((((((((........).)))(((((....(((((.......))))))))))..)))).)))). (-16.52 = -16.43 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:40 2006