Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 739,398 – 739,518 |
Length | 120 |
Max. P | 0.689888 |
Location | 739,398 – 739,518 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.53 |
Mean single sequence MFE | -26.73 |
Consensus MFE | -22.23 |
Energy contribution | -22.22 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.42 |
Structure conservation index | 0.83 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 739398 120 + 27905053 CAUUUCUUCUCCAUGCAUAUGAUUUUGCCACCUUUAGGCGGCUUUUAUCGUACUUUGUUCAACAAAUUGCCAUAAUUUGUUGUAAAUUCCAAUCAAGUGGUUGCCACUAGUGGUUCGCAU ............((((.((((((...(((.((....)).)))....)))))).......((((((((((...))))))))))......(((....(((((...)))))..)))...)))) ( -29.20) >DroSec_CAF1 6737 120 + 1 CAUUCCCUCUCCGUGCACAUGAUUUUGCAAUCUUUAGGCGGCUUCUAUCGUGCUUUGUUCAACAAAUUGCCAUAAUUUGUUGUAAAUUCCAAUCAAGUGGUUGCCACUAGUGGUUCGCAC ............((((.((((((...((..((....))..))....)))))).......((((((((((...))))))))))......(((....(((((...)))))..)))...)))) ( -25.90) >DroSim_CAF1 6746 120 + 1 CAUUCCCUCUGCGUGCACAUGAUUUUGCAAUCUUUAGGCGGCUUCUAUCGUGCUUUGUUCAACAAAUUGCCAUAAUUUGUUGUAAAUUCCAAUCAAGUGGUUGCCACUAGUGGUUCGCAC .........((((.((.(((((((....))))....(((((((.((....((.......((((((((((...)))))))))).......))....)).)))))))....))))).)))). ( -27.74) >DroEre_CAF1 7172 118 + 1 CAUUUCUUCUCCAUGCACACGAUUUUGCAAUCUUUAGGUGGCUUUUAUCGUGCUUUGUUCAACAAAUUGCCAUAAUUUGCUGUAAAUUCCAACU-AGU-GUUGCCACUAGUGGUCCGCUC ..............((.((((((...((.(((....))).))....)))))).......((.(((((((...))))))).))......(((.((-(((-(....)))))))))...)).. ( -24.10) >consensus CAUUCCCUCUCCAUGCACAUGAUUUUGCAAUCUUUAGGCGGCUUCUAUCGUGCUUUGUUCAACAAAUUGCCAUAAUUUGUUGUAAAUUCCAAUCAAGUGGUUGCCACUAGUGGUUCGCAC ............((((.((((((...((..((....))..))....)))))).......((((((((((...))))))))))......(((....(((((...)))))..)))...)))) (-22.23 = -22.22 + -0.00)
Location | 739,398 – 739,518 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.53 |
Mean single sequence MFE | -29.35 |
Consensus MFE | -23.10 |
Energy contribution | -22.85 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.19 |
Mean z-score | -1.78 |
Structure conservation index | 0.79 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 739398 120 - 27905053 AUGCGAACCACUAGUGGCAACCACUUGAUUGGAAUUUACAACAAAUUAUGGCAAUUUGUUGAACAAAGUACGAUAAAAGCCGCCUAAAGGUGGCAAAAUCAUAUGCAUGGAGAAGAAAUG (((((..(((..(((((...)))))....)))......(((((((((.....)))))))))..........(((....((((((....))))))...)))...)))))............ ( -30.60) >DroSec_CAF1 6737 120 - 1 GUGCGAACCACUAGUGGCAACCACUUGAUUGGAAUUUACAACAAAUUAUGGCAAUUUGUUGAACAAAGCACGAUAGAAGCCGCCUAAAGAUUGCAAAAUCAUGUGCACGGAGAGGGAAUG ((((...(((..(((((...)))))....)))......(((((((((.....)))))))))......))))...........(((......((((........)))).....)))..... ( -27.20) >DroSim_CAF1 6746 120 - 1 GUGCGAACCACUAGUGGCAACCACUUGAUUGGAAUUUACAACAAAUUAUGGCAAUUUGUUGAACAAAGCACGAUAGAAGCCGCCUAAAGAUUGCAAAAUCAUGUGCACGCAGAGGGAAUG .((((..(((..(((((...)))))....)))......(((((((((.....)))))))))......(((((.(((.......)))..((((....)))).))))).))))......... ( -28.40) >DroEre_CAF1 7172 118 - 1 GAGCGGACCACUAGUGGCAAC-ACU-AGUUGGAAUUUACAGCAAAUUAUGGCAAUUUGUUGAACAAAGCACGAUAAAAGCCACCUAAAGAUUGCAAAAUCGUGUGCAUGGAGAAGAAAUG ..((...(((((((((....)-)))-)).)))......(((((((((.....)))))))))......(((((((....((............))...))))))))).............. ( -31.20) >consensus GUGCGAACCACUAGUGGCAACCACUUGAUUGGAAUUUACAACAAAUUAUGGCAAUUUGUUGAACAAAGCACGAUAAAAGCCGCCUAAAGAUUGCAAAAUCAUGUGCACGGAGAAGAAAUG (((((........(((((..(((......)))......(((((((((.....))))))))).................))))).....((((....))))...)))))............ (-23.10 = -22.85 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:07 2006