Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,018,889 – 4,018,984 |
Length | 95 |
Max. P | 0.549838 |
Location | 4,018,889 – 4,018,984 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 80.79 |
Mean single sequence MFE | -30.94 |
Consensus MFE | -22.92 |
Energy contribution | -24.52 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.74 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4018889 95 - 27905053 --------UGUUG---------CUGCUGCUGCGUGUUGCUGCCGUGAAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAGUCACACGUGGCCUCCGCA --------...((---------(.(..((..(((((.((((....((((((((((((..((((....))))...)))).)).))))))...)))).)))))..))..).))) ( -31.30) >DroPse_CAF1 5814 108 - 1 GUUGGUGGUGCCACUGGUGCUGCCACUGCAGCGUGU---UGCCGUGUAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAGUCACACGUGGCCUCCGC- ....((((.(((((..((((((..(((((((((.((---(((...))))))))))))))............((((....))))........))).)))..)))))..))))- ( -35.60) >DroSim_CAF1 25142 89 - 1 --------UG---------------CUGCUGCGUGUUGCUGCCGUGAAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAGUCACACGUGGCCUCCGCA --------.(---------------(.((..(((((.((((....((((((((((((..((((....))))...)))).)).))))))...)))).)))))..))....)). ( -29.50) >DroYak_CAF1 25120 90 - 1 ----------------------CUGCUGCUGCGUGUUGCUGCCGUGAAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAGUCACACGUGGCCUCCGCA ----------------------..((.((..(((((.((((....((((((((((((..((((....))))...)))).)).))))))...)))).)))))..))....)). ( -29.50) >DroPer_CAF1 6087 108 - 1 GUUGGUGCUGCCACUGGGGCUGCCACUGCAGCGUGU---UGGCGUGUAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAAUCACACGUGGCCUUCGC- ....(((..(((((....(((((....)))))((((---.((((......))))..((((.((..((((..((((....))))))))..)).)))))))))))))...)))- ( -28.80) >consensus ________UG____________CCACUGCUGCGUGUUGCUGCCGUGAAAUUGCUGCGGUUUGUUCAAAUAAUUGCGCAUGCAAAUUUCUAUUAGUCACACGUGGCCUCCGCA ...........................(((((((((.((((....((((((((((((..((((....))))...)))).)).))))))...)))).)))))))))....... (-22.92 = -24.52 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:34 2006