Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,009,351 – 4,009,466 |
Length | 115 |
Max. P | 0.822997 |
Location | 4,009,351 – 4,009,466 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.47 |
Mean single sequence MFE | -28.53 |
Consensus MFE | -27.27 |
Energy contribution | -27.65 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.07 |
Mean z-score | -1.62 |
Structure conservation index | 0.96 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822997 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4009351 115 - 27905053 CAGGCAGACGUGACAAUCCAUCCAUUUUUAAAGCCCAUAAGUAGACAUGACUGGGGGAAUCUUAUCGU-GAAGCCCAAAAACCCAUUGAGAUUUCCCUAGCAUUCCACGUUGUCCC---- ..(((((.((((....................((......)).((.(((.((((((((((((((..((-(.............)))))))))))))))))))))))))))))))..---- ( -29.62) >DroSec_CAF1 15030 115 - 1 CAGGCAGACGUGACAAUCCAUCCAUUUUUAAGGCCCAUAAGUAGACAUGACUGAGGGAAUCUUAUCGU-GAAGCCCAAAAACCCAUUGAGAUUUCCCUAGCAUUCCACGCUGUCCC---- ..(((((.((((.........((........))..........((.(((.(((.((((((((((..((-(.............))))))))))))).)))))))))))))))))..---- ( -26.62) >DroSim_CAF1 15615 115 - 1 CAGGCAGACGUGACAAUCCAUCCAUUUUUAAGGCCCAUAAGUAGACAUGACUGGGGGAAUCUUAUCGU-GAAGCCCAAAAACCCAUUGAGAUUUCCCUAGCAUUCCACGCUGUCCC---- ..(((((.((((.........((........))..........((.(((.((((((((((((((..((-(.............)))))))))))))))))))))))))))))))..---- ( -33.12) >DroYak_CAF1 15127 120 - 1 CAGGCAGACGUGACAAUCCAUCCAUUUUUCAGGCCCAUAAGUAGACAUGACUGGGGAAAUCUUAUCGCCGAAGCCCAAAAACCCAUUCAGAUUUCCCUAACAUUCCACGCUGUCCCCAAA ..(((((.((((.........((........))..........((.(((..(((((((((((..........................))))))))))).))))))))))))))...... ( -24.77) >consensus CAGGCAGACGUGACAAUCCAUCCAUUUUUAAGGCCCAUAAGUAGACAUGACUGGGGGAAUCUUAUCGU_GAAGCCCAAAAACCCAUUGAGAUUUCCCUAGCAUUCCACGCUGUCCC____ ..(((((.((((....................((......)).((.(((.((((((((((((((......................))))))))))))))))))))))))))))...... (-27.27 = -27.65 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:27 2006