Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,008,376 – 4,008,478 |
Length | 102 |
Max. P | 0.741616 |
Location | 4,008,376 – 4,008,478 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.54 |
Mean single sequence MFE | -18.20 |
Consensus MFE | -15.72 |
Energy contribution | -15.78 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -1.59 |
Structure conservation index | 0.86 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4008376 102 - 27905053 ---UCGAACUCUUUUUAAGCACUUCCCCGCUGGAAACCCUCGAAUCAGCAUCCUUUUUGCCAGUUCACAGGUGCAGCCCCACUUUUAACCCU-UUGCGCCAAAAAC ---..(((((..((((.(((........))).))))...........(((.......))).)))))...(((((((................-)))))))...... ( -17.99) >DroSec_CAF1 14006 102 - 1 ---UCGAACACUUUUUAAACACUUCCCCGCUGGAAACCCACGAAUCAGCAUCCUUUUUGCUAGUUCACAGGUGCAGCCCCACUUUUAACCCU-UUGCGCCAAAAAC ---..((((..................((.(((....)))))....((((.......)))).))))...(((((((................-)))))))...... ( -19.99) >DroSim_CAF1 14592 102 - 1 ---UCGAACACUUUGUAAGCACUUCCCCGCUGGAAACCCACGAAUCAGCAUCCUUUUUGCCAGUUCACAGGUGCAGCCCCACUUUUAACCCU-UUGCGCCAAAAAC ---..((((..(((((.(((........)))((....)))))))...(((.......)))..))))...(((((((................-)))))))...... ( -19.59) >DroYak_CAF1 14071 106 - 1 CUGUCGAACUCUCUUCACACCCCUCCCCGCUGGAACAACACGAAUCAGCAUCCUUUUUGCCAGUUCACAGGUGUAGCCCCACUUUUAACCCUUUUGCGCCAAAAAU .(((.(((((.............(((.....))).............(((.......))).))))))))(((((((.................)))))))...... ( -15.23) >consensus ___UCGAACACUUUUUAAACACUUCCCCGCUGGAAACCCACGAAUCAGCAUCCUUUUUGCCAGUUCACAGGUGCAGCCCCACUUUUAACCCU_UUGCGCCAAAAAC .....((((.............((((.....))))............(((.......)))..))))...(((((((.................)))))))...... (-15.72 = -15.78 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:26 2006