Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,007,931 – 4,008,025 |
Length | 94 |
Max. P | 0.848234 |
Location | 4,007,931 – 4,008,025 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 95.36 |
Mean single sequence MFE | -32.53 |
Consensus MFE | -26.47 |
Energy contribution | -26.47 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.01 |
Structure conservation index | 0.81 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4007931 94 + 27905053 GAACUGCGAAAGAUAGUUUGCUCAUAUCUAGAUGCAAAUUAUUAAUAUGGAGCUCAUAUAUUUUCGCGGCAAGUUGGCU------CCUUUGGGGCCGCCC ...((((((((((((((((((((.......)).)))))))))).(((((.....)))))..))))))))......((((------((...)))))).... ( -31.40) >DroSec_CAF1 13474 94 + 1 GAACUGCGAAAGAUAGUUUGCUCGUAUCUAGAUGCAAAUUAUUAAUAUGGAGCUCAUAUAUUUUCGCGGCAAGUUGGCU------CCUUCGGGGCCGCCC ...((((((((((((((((((((.......)).)))))))))).(((((.....)))))..))))))))......(((.------((....))))).... ( -32.90) >DroSim_CAF1 14059 94 + 1 GAACUGCGAAAGAUAGUUUGCUCGUAUCUAGAUGCAAAUUAUUAAUAUGGAGCUCAUAUAUUUUCGCGGCAAGUUGGCU------CCUUUGGGGCCGCCC ...((((((((((((((((((((.......)).)))))))))).(((((.....)))))..))))))))......((((------((...)))))).... ( -32.10) >DroYak_CAF1 13515 100 + 1 GAACUGCGAAAGAUAGUUUGCUCGUAUCUAGAUGCAAAUUAUUAAUAUGGAGCUCAUAUAUUUUCGCGGCAAGUUGGCUCCUGCUCCUUUGGGGCCGCGC ...((((((((((((((((((((.......)).)))))))))).(((((.....)))))..))))))))...((.((((((.........)))))))).. ( -33.70) >consensus GAACUGCGAAAGAUAGUUUGCUCGUAUCUAGAUGCAAAUUAUUAAUAUGGAGCUCAUAUAUUUUCGCGGCAAGUUGGCU______CCUUUGGGGCCGCCC ...((((((((((((((((((((.......)).)))))))))).(((((.....)))))..))))))))......((((.............)))).... (-26.47 = -26.47 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:25 2006