Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,007,826 – 4,007,919 |
Length | 93 |
Max. P | 0.741772 |
Location | 4,007,826 – 4,007,919 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 92.57 |
Mean single sequence MFE | -23.98 |
Consensus MFE | -19.80 |
Energy contribution | -20.43 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.11 |
Mean z-score | -1.78 |
Structure conservation index | 0.83 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741772 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4007826 93 - 27905053 UACUUCUCUUAAUUUCCAGCUGCUAAUUUAUGCAAAUUUCCCUCUAGUCCUAGUGCCGCCCCACUCGCACACGCACAAGGCGGUUGGCAGCAG------- ..................(((((((..................(((....))).((((((......((....))....)))))))))))))..------- ( -22.10) >DroSec_CAF1 13369 93 - 1 UACUUCUCUUAAUUUCCAGCUGCUAAUUUAUGCAAAUUUGGCUCUAGUCCUAGUGCCAUCCCACUCGCACACGCACAAGACGGCUGGCAGCAG------- ...............(((((((((..............((((.(((....))).))))........((....))...)).)))))))......------- ( -22.20) >DroSim_CAF1 13954 93 - 1 UACUUCUCUUAAUUUCCAGCUGCUAAUUUAUGCAAAUUUGGCUCUAGUCCUAGUGCCAUCCCACUCGCACACGCACAAGACGGCUGGCAGCAG------- ...............(((((((((..............((((.(((....))).))))........((....))...)).)))))))......------- ( -22.20) >DroYak_CAF1 13403 100 - 1 UACUUCUCUUAAUUUCCAGCUGCUAAUUUAUGCAAAUUUGGCUCUAGUCCUAGUGCCAUCCCACUCGCACACGCACAAGGCGGCUGGCAGUAGGCAGCAG ..((.((((((....(((((((((..............((((.(((....))).))))........((....))....)))))))))...)))).)).)) ( -29.40) >consensus UACUUCUCUUAAUUUCCAGCUGCUAAUUUAUGCAAAUUUGGCUCUAGUCCUAGUGCCAUCCCACUCGCACACGCACAAGACGGCUGGCAGCAG_______ ...............(((((((((..............((((.(((....))).))))........((....))....)))))))))............. (-19.80 = -20.43 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:25 2006