Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,007,398 – 4,007,488 |
Length | 90 |
Max. P | 0.870688 |
Location | 4,007,398 – 4,007,488 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 95.48 |
Mean single sequence MFE | -19.73 |
Consensus MFE | -19.06 |
Energy contribution | -19.62 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.75 |
Structure conservation index | 0.97 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870688 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4007398 90 - 27905053 CACCACAACAACAACAACAACCGGUUACCUGCCCUGCACACACAAAAAAACACGCCCCUCUCACGUUCGGUAAGAGAAAGUGUGACAGGC ....................(((((.....))).................(((((..((((.((.....)).))))...)))))...)). ( -14.20) >DroSec_CAF1 12944 87 - 1 CGCCACAACAA---CAACAACCGGUUACCUGCCCUGCACACACAAAAAAACACGCCCCUCUCGCGUUCGGUGAGAGAAAGUGUGACAGGC .(((.......---........(((.....))).................(((((..(((((((.....)))))))...)))))...))) ( -22.80) >DroSim_CAF1 13529 87 - 1 CGCCACAACAA---CAACAACCGGUUACCUGCCCUGCACACACAAAAAAACACGCCCCUCUCGCGUUCGGUGAGAGAAAGUGUGACAGGC .(((.......---........(((.....))).................(((((..(((((((.....)))))))...)))))...))) ( -22.80) >DroYak_CAF1 12957 87 - 1 UGCCACAACAA---CAACAACCGGUUACCUGCCCUGCACACACAAAAAAACACGCCCCUCUCGCGUUCGAUGAGAGAAAGUGUGACAGGC .(((.......---........(((.....))).................(((((..(((((((....).))))))...)))))...))) ( -19.10) >consensus CGCCACAACAA___CAACAACCGGUUACCUGCCCUGCACACACAAAAAAACACGCCCCUCUCGCGUUCGGUGAGAGAAAGUGUGACAGGC .(((..................(((.....))).................(((((..(((((((.....)))))))...)))))...))) (-19.06 = -19.62 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:24 2006