Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 738,797 – 738,891 |
Length | 94 |
Max. P | 0.847276 |
Location | 738,797 – 738,891 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 80.09 |
Mean single sequence MFE | -27.52 |
Consensus MFE | -16.92 |
Energy contribution | -17.48 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.20 |
Mean z-score | -2.05 |
Structure conservation index | 0.61 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.847276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 738797 94 + 27905053 UUUGUUUCAUGUAAGCCAGC-AAAAGCGGAGAACAUAUAACAAAAUGAGGGUGGUCGUUGAUGCGCGGUUCACCCUUGUUCUCCUUUGUUUUUCG .(((((..((((...((.((-....))))...))))..)))))((..(((((((.(((....)))....)))))))..))............... ( -24.30) >DroSec_CAF1 6253 84 + 1 UUUGUUUCAUGUAAGCCAGC-GAAAGCUGAGAACAUAUAACAAAAUGGGGGUGGUCGUU----------CCACCCUUGUUCGCCUUUGUUUUUCG .(((((..((((...(((((-....)))).).))))..)))))((..(((((((.....----------)))))))..))............... ( -30.00) >DroSim_CAF1 6262 84 + 1 UUUGUUUAAUGUGAGCCAGC-GAAAGCUGAGAACAUAUAACAAAAUGGGGGUGGUCGUU----------CCACCCUUGUUCGCCUUUGUUUUUCG .(((((..(((((..(((((-....)))).)..))))))))))((..(((((((.....----------)))))))..))............... ( -30.50) >DroEre_CAF1 6598 95 + 1 UCCCUUUCGUGUAAGCCAGCGAAAAGCGGAGAACAAAUAUCACAAUGGGGGUGGUCGUUGAUGUGCGUUCCACCCCUGUUCUCCUUUGUUUUUCG ....((((((........))))))..(((((((((((......(((((((((((.(((......)))..)))))))))))....))))))))))) ( -34.80) >DroYak_CAF1 6841 90 + 1 UCCGUUUCAUCCAAGUCAGC-AAAAGCGGGGAACAAAUAAUAAAAUGGGGGUGGUCGUUGGUGUGCGUUCCACACUU----UUCUUUGUUUUUCG ..................((-....))(..(((((((.........((((((((.(((......)))..)))).)))----)..)))))))..). ( -18.00) >consensus UUUGUUUCAUGUAAGCCAGC_AAAAGCGGAGAACAUAUAACAAAAUGGGGGUGGUCGUUG_UG_GCG_UCCACCCUUGUUCUCCUUUGUUUUUCG ..........................(((((((((........(((((((((((...............)))))))))))......))))))))) (-16.92 = -17.48 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:05 2006