Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,003,040 – 4,003,137 |
Length | 97 |
Max. P | 0.963413 |
Location | 4,003,040 – 4,003,137 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.99 |
Mean single sequence MFE | -21.90 |
Consensus MFE | -18.59 |
Energy contribution | -18.84 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.29 |
Structure conservation index | 0.85 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963413 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4003040 97 + 27905053 UGCCACUCCACUCCCCAGACAAACUGUCUGUCAAGCGAUUUGAAUCCCCAAUC---------------CGCAAUCCCAGAAUCCCA--------CAAUCCCACAGACGCGGAGUGCAUGA (((.(((((.(((..(((((.....)))))....(((..(((......)))..---------------)))...............--------..........)).).))))))))... ( -23.40) >DroSec_CAF1 8632 104 + 1 UGCCACUCCACUCCCCACACAAACUGUCUGUCAAGCGAUUUGAAUCCCCAAUCCGAAAU--------CCGCAAUCCCAGAAUCCCA--------CAAUCCCACAGACGCGGAGUGCAUGA (((.(((((.(..............((((((...(((((((..............))))--------.))).......(.....).--------.......))))))).))))))))... ( -16.17) >DroSim_CAF1 9202 104 + 1 UGCCACUCCACUCCCCAGACAAACUGUCUGUCAAGCGAUUUGAAUCCCCAAUCCGCAAU--------CCGCAAUCCCAGAAUCCCA--------CAAUCCCACAGACGCGGAGUGCAUGA (((.(((((.(((..(((((.....)))))....(((..(((......)))..)))...--------...................--------..........)).).))))))))... ( -23.40) >DroYak_CAF1 8581 120 + 1 UGCCACUCCACUCCCCAGACAAACUGUCUGUCAAGCGAUUUGAAUCCCCAAUCCGCAAUCCCACCAUCCGCAAUCCCAGAAUCCCACAAUUCCACAAUCCCACAGACGCGGAGUGCAUGA (((.(((((......(((((.....)))))....(((.((((............((.............)).......((((......))))..........)))))))))))))))... ( -24.62) >consensus UGCCACUCCACUCCCCAGACAAACUGUCUGUCAAGCGAUUUGAAUCCCCAAUCCGCAAU________CCGCAAUCCCAGAAUCCCA________CAAUCCCACAGACGCGGAGUGCAUGA (((.(((((......(((((.....)))))....(((.((((............................................................)))))))))))))))... (-18.59 = -18.84 + 0.25)
Location | 4,003,040 – 4,003,137 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.99 |
Mean single sequence MFE | -36.67 |
Consensus MFE | -29.86 |
Energy contribution | -31.43 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.81 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4003040 97 - 27905053 UCAUGCACUCCGCGUCUGUGGGAUUG--------UGGGAUUCUGGGAUUGCG---------------GAUUGGGGAUUCAAAUCGCUUGACAGACAGUUUGUCUGGGGAGUGGAGUGGCA .....((((((((..((..(.((((.--------..(((((((.((......---------------..)).))))))).)))).)....(((((.....)))))))..))))))))... ( -33.70) >DroSec_CAF1 8632 104 - 1 UCAUGCACUCCGCGUCUGUGGGAUUG--------UGGGAUUCUGGGAUUGCGG--------AUUUCGGAUUGGGGAUUCAAAUCGCUUGACAGACAGUUUGUGUGGGGAGUGGAGUGGCA .....((((((((((((((((((((.--------...))))))(.((((..((--------((..(......)..)))).)))).)...))))))..(((......)))))))))))... ( -32.90) >DroSim_CAF1 9202 104 - 1 UCAUGCACUCCGCGUCUGUGGGAUUG--------UGGGAUUCUGGGAUUGCGG--------AUUGCGGAUUGGGGAUUCAAAUCGCUUGACAGACAGUUUGUCUGGGGAGUGGAGUGGCA .....((((((((..((..(.((((.--------..(((((((.((.((((..--------...)))).)).))))))).)))).)....(((((.....)))))))..))))))))... ( -38.60) >DroYak_CAF1 8581 120 - 1 UCAUGCACUCCGCGUCUGUGGGAUUGUGGAAUUGUGGGAUUCUGGGAUUGCGGAUGGUGGGAUUGCGGAUUGGGGAUUCAAAUCGCUUGACAGACAGUUUGUCUGGGGAGUGGAGUGGCA .....((((((.(((((((..((((.(((((((....))))))).)))))))))))...(((((.(......).))))).....((((..(((((.....)))))..))))))))))... ( -41.50) >consensus UCAUGCACUCCGCGUCUGUGGGAUUG________UGGGAUUCUGGGAUUGCGG________AUUGCGGAUUGGGGAUUCAAAUCGCUUGACAGACAGUUUGUCUGGGGAGUGGAGUGGCA .....((((((((..((..(.((((...........(((((((.((.((((((.........)))))).)).))))))).)))).)....(((((.....)))))))..))))))))... (-29.86 = -31.43 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:13 2006