Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,001,298 – 4,001,519 |
Length | 221 |
Max. P | 0.627389 |
Location | 4,001,298 – 4,001,406 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -22.24 |
Energy contribution | -22.80 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.88 |
Structure conservation index | 0.72 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4001298 108 + 27905053 UUUGCCGCCGAGAUUCUGUCCAGGCACGCUAU--------AUCGCCAUAUCGC---UAUAUGCCU-AGCUAUAUUCGCUAUAUAACCCAUAAGCCGUGUGCUUGCAGUCGGUAAAUUACA ......(((((....(((..((((((((((((--------((.((.((((.((---((......)-))).))))..)).)))))...........)))))))))))))))))........ ( -27.80) >DroSec_CAF1 6904 108 + 1 UUUGCCGCCGAGAUUCUGUCCAGGCACGCUAU--------AUCGCCAUAUCGC---UAUAUGCCU-AGCUAUAUUCGCUAUAUAACCCAUAAGCCGUGUGCUUGCAGUCGGUAAAUUACA ......(((((....(((..((((((((((((--------((.((.((((.((---((......)-))).))))..)).)))))...........)))))))))))))))))........ ( -27.80) >DroSim_CAF1 6967 108 + 1 UUUGCCGCCGAGAUUCUGUCCAGGCACGCUAU--------AUCGCCAUAUCGC---UAUAUGCCU-AGCUAUAUUCGCUAUAUAACCCAUAAGCCGUGUGCUUGCAGUCGGUAAAUUACA ......(((((....(((..((((((((((((--------((.((.((((.((---((......)-))).))))..)).)))))...........)))))))))))))))))........ ( -27.80) >DroYak_CAF1 6822 120 + 1 UUUGCCGCCGAGAUUCUGUCCAGGCACGCUAUGUCGCUAUAUCGCCAUAUCGCUGGUAUAUGCCUUGGCUAUAUUCGCUAUAUGGCCCAUAAGCCUGCUGCCUGCAGUCGGUAAAUUACA ......(((((....(((..((((((.((......(((.....(((((((.((..(((((.((....)))))))..)).))))))).....)))..))))))))))))))))........ ( -40.20) >consensus UUUGCCGCCGAGAUUCUGUCCAGGCACGCUAU________AUCGCCAUAUCGC___UAUAUGCCU_AGCUAUAUUCGCUAUAUAACCCAUAAGCCGUGUGCUUGCAGUCGGUAAAUUACA ......(((((....(((..(((((((((...........................((((.((....))))))...(((.(((.....)))))).)))))))))))))))))........ (-22.24 = -22.80 + 0.56)
Location | 4,001,406 – 4,001,519 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.87 |
Mean single sequence MFE | -32.61 |
Consensus MFE | -28.19 |
Energy contribution | -28.69 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.86 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4001406 113 + 27905053 ACAACUAUUACGGCCCAGCCCCACCAAAA------GCCCAGGCCAAAGCCAUGGCAAUUUCUUGGAAAACUUU-UUUUGUUCGCUUUCGGGCCUGGCCACAUGAAAAUUUAUGAGUGGAC ....(((((..((((..((((........------(((..(((....)))..)))........((..(((...-....)))..))...))))..)))).(((((....)))))))))).. ( -31.40) >DroSec_CAF1 7012 114 + 1 ACAACUAUUACGGCCCAGCCCCACCAAAA------GCCCAUGCCAAAGCCAUGGCAAUUUCUUGGAAAACUCUGUUUUGUGCGCUUUCGGGCCUGGCCACAUGAAAAUUUAUGAGUGGAC ....(((((..((((..((((.....(((------((.(((((((......))))........(((....))).....))).))))).))))..)))).(((((....)))))))))).. ( -31.90) >DroSim_CAF1 7075 114 + 1 ACAACUAUUACGGCCCAGCCCCACCAAAA------GCCCAGGCCAAAGCCAUGGCAAUUUCUUGGAAAACUCUGUUGUGUGCGCUUUCGGGCCUGGCCACAUGAAAAUUUAUGAGUGGAC ...........(((...)))((((.....------(.(((((((.((((((((.((((...((....))....)))))))).))))...))))))).).(((((....))))).)))).. ( -33.00) >DroYak_CAF1 6942 120 + 1 ACAACUAUUACGGCCCAGCCCCACCAAAAGCCAAAGCCCAGGCCAAAACCAUGGCAAUUUCUUGGAAAACUCUGUUUUGUGCGCUUUCGGGCCUGGCCACAUGAAAAUUUAUGAGUGGAC ....(((((..((((..((((........((((((((..((((((......))))..((((...)))).))..)))))).))......))))..)))).(((((....)))))))))).. ( -34.14) >consensus ACAACUAUUACGGCCCAGCCCCACCAAAA______GCCCAGGCCAAAGCCAUGGCAAUUUCUUGGAAAACUCUGUUUUGUGCGCUUUCGGGCCUGGCCACAUGAAAAUUUAUGAGUGGAC ....(((((..((((..((((..((((........(((..(((....)))..)))......))))...((........))........))))..)))).(((((....)))))))))).. (-28.19 = -28.69 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:06 2006