Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,001,085 – 4,001,178 |
Length | 93 |
Max. P | 0.782307 |
Location | 4,001,085 – 4,001,178 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.79 |
Mean single sequence MFE | -21.55 |
Consensus MFE | -16.44 |
Energy contribution | -17.44 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 0.76 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4001085 93 - 27905053 UUGGGUGGCUUACUUGGGCAGCCCUUCUUC---------------------------UCGACAUUUAAUUCGCCUUGAUUAAAGUGUCUUGCCAAAUCAUGCCACAUUAAUUAUGACCCA .((((((((.......(((((.........---------------------------..(((((((((((......)))).)))))))))))).......))).(((.....)))))))) ( -22.84) >DroSec_CAF1 6691 93 - 1 UUGGGUGGCUCACUGGGGCAGCCCUUCUUC---------------------------UCGACAUUUAAUUCGCCUUGAUUAAAGUGUCUUGCCAAAUCAUGCCACAUUAAUUAUGACCCA .((((((((.......(((((.........---------------------------..(((((((((((......)))).)))))))))))).......))).(((.....)))))))) ( -22.84) >DroSim_CAF1 6754 93 - 1 UUGGGUGGCUCACUGGGGCAGCCCUUCUUC---------------------------UCGACAUUUAAUUCGCCUUGAUUAAAGUGUCUUGCCAAAUCAUGCCACAUUAAUUAUGACCCA .((((((((.......(((((.........---------------------------..(((((((((((......)))).)))))))))))).......))).(((.....)))))))) ( -22.84) >DroYak_CAF1 6585 117 - 1 UUGGGUGGCUCACAC---AAGCCCUUCUUCCUCUCUUCCCUUGUUCCCCUCUACAUUUCUACAUUUAAUUCGCCUUGAUUAAAGUGUCUUGCCAAAUCAUGCCACAUCAAUUAUGACCCA .((((((((..((((---.......................(((........)))........(((((((......)))))))))))...))))..(((((..........))))))))) ( -17.70) >consensus UUGGGUGGCUCACUGGGGCAGCCCUUCUUC___________________________UCGACAUUUAAUUCGCCUUGAUUAAAGUGUCUUGCCAAAUCAUGCCACAUUAAUUAUGACCCA .((((((((.......(((((.....)................................(((((((((((......)))).))))))).)))).......))).(((.....)))))))) (-16.44 = -17.44 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:04 2006