Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,998,719 – 3,998,834 |
Length | 115 |
Max. P | 0.542298 |
Location | 3,998,719 – 3,998,834 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.82 |
Mean single sequence MFE | -26.08 |
Consensus MFE | -20.51 |
Energy contribution | -21.07 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.45 |
Structure conservation index | 0.79 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3998719 115 - 27905053 AAUCACCGGAAA-----AAAGUUGGAGCCAACGGCAAACAGCAAAAGCAACUUGUCAGCGAAGAACUGCAAAACACUUCGCGCAAUCACUUCAAACGCUGCCUUUGAGUGACCAAAUUUG ..((((((((..-----...((((....))))((((....((....))...((((..((((((............)))))))))).............)))))))).))))......... ( -25.20) >DroSec_CAF1 4386 115 - 1 ACUCACCGGAAA-----AAAGUUGGAGCCAACGGCAAACAGCAAAAGCAACUUGUCAGCGAAGAACUGCAAAACACUUCGCGCAAUCACUCCAAACGCUGCCUUUGAGUGACCAAAUUUG (((((..((...-----....((((((.....(((((...((....))...))))).((((((............)))))).......))))))......))..)))))........... ( -28.92) >DroSim_CAF1 4426 116 - 1 ACUCACCGGAAAA----AAAGUUGGAGCCAACGGCAAACAGCAAAAGCAACUUGUCAGCGAAGAACUGCAAAACACUUCGCGCAAUCACUUCAAACGCUGCCUUUGAGUGACCAAAUUUG (((((..((....----....((((((.....(((((...((....))...))))).((((((............)))))).......))))))......))..)))))........... ( -25.44) >DroYak_CAF1 4055 113 - 1 AGUCACUGGGAAAAAAAAACGAUGAAGCG------AAACAGCAAGAGCAACUUCUCAGCGAGGAACUG-AAAACACUUCGCGCAAUCACUUCAAACGCUGCCUUUGAGUGACCAAAUUUG .((((((.(((...........(((((.(------(....((..(((......))).((((((.....-......))))))))..)).))))).........))).))))))........ ( -24.75) >consensus ACUCACCGGAAA_____AAAGUUGGAGCCAACGGCAAACAGCAAAAGCAACUUGUCAGCGAAGAACUGCAAAACACUUCGCGCAAUCACUUCAAACGCUGCCUUUGAGUGACCAAAUUUG .......((.................((....(((((...((....))...))))).((((((............))))))))..(((((.((((.......)))))))))))....... (-20.51 = -21.07 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:54 2006