Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,998,080 – 3,998,276 |
Length | 196 |
Max. P | 0.798116 |
Location | 3,998,080 – 3,998,200 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.66 |
Mean single sequence MFE | -29.05 |
Consensus MFE | -28.27 |
Energy contribution | -28.52 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.97 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3998080 120 + 27905053 AAAAUAAAAGAAAAAAGGAGUACCAAAGAGGAAAAACAAUGAGAGCUAACCAGUUAACCAGCUUGUUUGGGCCAACGUGUGAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACA ................((.(((((.....)).........((((((((((.((((....)))).))).(((((((((((.....)))))....)))))))))))))...)))...))... ( -29.30) >DroSec_CAF1 3750 118 + 1 AAAAUAAAA--AAAAAGGACUACCAAAGAGGAAAAACAAUGAGAGCUAACCAGUUAACCAGCUCGUUUGGGCCAACGUGUGAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACA .........--.....((((..((.....)).........((((((((((.((((....)))).))).(((((((((((.....)))))....)))))))))))))......)).))... ( -28.30) >DroSim_CAF1 3798 118 + 1 AAAAUAAAA--AAAAAGGAGUACCAAAGAGGAAAAACAAUGAGAGCUAACCAGUUAACCAGCUUGUUUGGGCCAACGUGUGAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACA .........--.....((.(((((.....)).........((((((((((.((((....)))).))).(((((((((((.....)))))....)))))))))))))...)))...))... ( -29.30) >DroYak_CAF1 3385 119 + 1 AAAACAAAAAAAAUAAGGAGUACCAAAGAGGAA-AACAAUGAGAGCUAACCAGUUAACCAGCUUGUUUGGGCCAACGUGUGAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACA ................((.(((((.....))..-......((((((((((.((((....)))).))).(((((((((((.....)))))....)))))))))))))...)))...))... ( -29.30) >consensus AAAAUAAAA__AAAAAGGAGUACCAAAGAGGAAAAACAAUGAGAGCUAACCAGUUAACCAGCUUGUUUGGGCCAACGUGUGAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACA ................((.(((((.....)).........((((((((((.((((....)))).))).(((((((((((.....)))))....)))))))))))))...)))...))... (-28.27 = -28.52 + 0.25)
Location | 3,998,120 – 3,998,236 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.20 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -30.30 |
Energy contribution | -30.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.97 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798116 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3998120 116 + 27905053 GAGAGCUAACCAGUUAACCAGCUUGUUUGGGCCAACGUGUGAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACAAUGUGGUUGCCACAAAAAACAA----AUACAACAAAAUAA ((((((((((.((((....)))).))).(((((((((((.....)))))....)))))))))))))(((....))).....(((((...)))))........----.............. ( -30.30) >DroSec_CAF1 3788 116 + 1 GAGAGCUAACCAGUUAACCAGCUCGUUUGGGCCAACGUGUGAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACAAUGUGGUUGCCACAAAAAAAAA----GUACAACAAAAUAA ..(((((............)))))(((((((((((((((.....)))))....)))))))(((((((((....))).....(((((...)))))....))))----))..)))....... ( -32.20) >DroSim_CAF1 3836 114 + 1 GAGAGCUAACCAGUUAACCAGCUUGUUUGGGCCAACGUGUGAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACAAUGUGGUUGCCACAAA--AAAA----GUACAACAAAGUAA ((((((((((.((((....)))).))).(((((((((((.....)))))....)))))))))))))......((((.....(((((...)))))..--....----)))).......... ( -32.30) >DroYak_CAF1 3424 120 + 1 GAGAGCUAACCAGUUAACCAGCUUGUUUGGGCCAACGUGUGAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACAAUGUGGUUGCCACAAAAAAAAUAUAUAUACAACAAAAUAA ((((((((((.((((....)))).))).(((((((((((.....)))))....)))))))))))))(((....))).....(((((...))))).......................... ( -30.30) >consensus GAGAGCUAACCAGUUAACCAGCUUGUUUGGGCCAACGUGUGAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACAAUGUGGUUGCCACAAAAAAAAA____AUACAACAAAAUAA ((((((((((.((((....)))).))).(((((((((((.....)))))....)))))))))))))(((....))).....(((((...))))).......................... (-30.30 = -30.30 + 0.00)
Location | 3,998,160 – 3,998,276 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.77 |
Mean single sequence MFE | -28.22 |
Consensus MFE | -25.60 |
Energy contribution | -25.85 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.91 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748310 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3998160 116 + 27905053 GAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACAAUGUGGUUGCCACAAAAAACAA----AUACAACAAAAUAAAGGCAGGGAAAUGGGAAAACACGUUGACAACAACAAGCGC .......(((.((((.(((.(((((((((....))).....(((((...)))))........----............)))))).)))...))))....)))((((....))))...... ( -26.90) >DroSec_CAF1 3828 116 + 1 GAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACAAUGUGGUUGCCACAAAAAAAAA----GUACAACAAAAUAAAGGCAUGGAAAUGGGAAAACACGUUGACAACAACAAGCGC .......(((......((((((....))...((((((....(((((...)))))........----(.....)........))))))....))))....)))((((....))))...... ( -27.60) >DroSim_CAF1 3876 114 + 1 GAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACAAUGUGGUUGCCACAAA--AAAA----GUACAACAAAGUAAAGGCAGGGAAAUGGGAAAACACGUUGACAACAACAAGCGC .......(((.((((.(((.((((((((....((((.....(((((...)))))..--....----))))......)))))))).)))...))))....)))((((....))))...... ( -31.10) >DroYak_CAF1 3464 120 + 1 GAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACAAUGUGGUUGCCACAAAAAAAAUAUAUAUACAACAAAAUAAAGGCAGGGAAAUGGGAAAACACGUUGACAACAACCAGCGC .......(((.((((.(((.(((((((((....))).....(((((...)))))........................)))))).)))...))))....)))((((........)))).. ( -27.30) >consensus GAAUUACGUGGCCUGGCCCAGCUUUUGCAUACGUGCCACAAUGUGGUUGCCACAAAAAAAAA____AUACAACAAAAUAAAGGCAGGGAAAUGGGAAAACACGUUGACAACAACAAGCGC .......(((.((((.(((.(((((((((....))).....(((((...)))))........................)))))).)))...))))....)))((((....))))...... (-25.60 = -25.85 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:52 2006