Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,997,887 – 3,998,004 |
Length | 117 |
Max. P | 0.850406 |
Location | 3,997,887 – 3,998,004 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.49 |
Mean single sequence MFE | -29.88 |
Consensus MFE | -25.23 |
Energy contribution | -25.85 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.03 |
Mean z-score | -2.13 |
Structure conservation index | 0.84 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3997887 117 - 27905053 AAUUCCUCAAAAACAAAAAAAGAUGUGUAAUAAAAAAACAUAUAUUUUCCAGGGCGGUGCGUUGUGCAACGGCAUAACUUACAAGACGCUGCUGGUG---CUCCAGCUACUUGAGUUAUU (((..(((((.......((((.((((((.........)))))).))))....(((((((.(((((((....))))))).)))....))))(((((..---..)))))...)))))..))) ( -29.00) >DroSec_CAF1 3558 116 - 1 AAUUCCUCAAAAACAAA-AAAGAUGUGUAAUAAAAAAACAUAUAUUUUCCAGGGCGGUUCGUUGUGCAACGGCAUAACUUACAAGUCGCUGCUGCUG---CUCCAGCUACUUGAGUUAUU (((..(((((......(-(((.((((((.........)))))).)))).((((((.((..(((((((....)))))))..))..))).)))..((((---...))))...)))))..))) ( -24.80) >DroSim_CAF1 3606 116 - 1 AAUUCCUCAAAAACAAA-AAAGAUGUGUAAUAAAAAAACAUAUAUUUUCCAGGGCGGUGCGUUGUGCAACGGCAUAACUUACAAGUCGCUGCUGCUG---CUCCAGCUACUUGAGUUAUU (((..(((((......(-(((.((((((.........)))))).))))....(((((.(((((((((....))))))).........((....)).)---).)).)))..)))))..))) ( -26.00) >DroYak_CAF1 3187 118 - 1 AAUUCCUCAAUGGAAAA-AAAGAUGUGUAAUAAA-AAACAUAUAUUUUCCAGGGCGGUGCGUUGUGCAACGGCAUAACUUACAAGUCGCUGCUGCUGCCGCUGCAGCUACUUGAGUUAUU ....((.(..(((((((-....((((((......-..)))))).)))))))..).))...(((((((....)))))))...(((((.(((((.((....)).))))).)))))....... ( -39.70) >consensus AAUUCCUCAAAAACAAA_AAAGAUGUGUAAUAAAAAAACAUAUAUUUUCCAGGGCGGUGCGUUGUGCAACGGCAUAACUUACAAGUCGCUGCUGCUG___CUCCAGCUACUUGAGUUAUU (((..(((((............((((((.........)))))).........(((((((.(((((((....))))))).)))....))))(((((.......)))))...)))))..))) (-25.23 = -25.85 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:46 2006