Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,997,111 – 3,997,224 |
Length | 113 |
Max. P | 0.833488 |
Location | 3,997,111 – 3,997,224 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.13 |
Mean single sequence MFE | -29.88 |
Consensus MFE | -26.38 |
Energy contribution | -26.62 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 0.88 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3997111 113 + 27905053 CGGCGGCGCUGUUACACCUGCUCCAAAAUUGGAAAUUGUUUAAGCAUGCAGCGGUGGCAGCAACAACUAAGCAGCAACCAACAACCAA-------CAACGGGCCAUAAACUAUAACGGAU ....(((((((((((..((((((((....))))...(((....))).))))..)))))))).......................((..-------....)))))................ ( -30.40) >DroSec_CAF1 2816 106 + 1 CGGCGGCGCUGUUACACCUGCUCCAAAAUUGGAAAUUGUUUAAGCAUGCAGCGUUGGCAGCAACAACUAAGCAGCAACC-------AA-------CAACGGGCCAUAAACUAUAACGGAU ....(((((((((....((((((((....))))...(((....))).)))).((((.......))))..))))))..((-------..-------....)))))................ ( -26.50) >DroSim_CAF1 2857 113 + 1 CGGCGGCGCUGUUACACCUGCUCCAAAAUUGGAAAUUGUUUAAGCAUGCAGCGGUGGCAGCAACAACUAAGCAGCAACCAACAACCAA-------CAACGGGCCAUAAACUAUAACGGAU ....(((((((((((..((((((((....))))...(((....))).))))..)))))))).......................((..-------....)))))................ ( -30.40) >DroYak_CAF1 2390 120 + 1 CGGCGGCGCUGUUACACCUGCUCCAAAAUUGGAAAUUGUUUAAGCAUGCAGCGGUGGCAGCAACAACUAAACAGCAACCAACAACCAACAACCGACAACGGGCCAUAAACUAUAACGGAU ....(((((((((((..((((((((....))))...(((....))).))))..))))))))..............................(((....))))))................ ( -32.20) >consensus CGGCGGCGCUGUUACACCUGCUCCAAAAUUGGAAAUUGUUUAAGCAUGCAGCGGUGGCAGCAACAACUAAGCAGCAACCAACAACCAA_______CAACGGGCCAUAAACUAUAACGGAU ....(((((((((((..((((((((....))))...(((....))).))))..))))))))................((....................)))))................ (-26.38 = -26.62 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:45 2006