Locus 1350

Sequence ID 3R_DroMel_CAF1
Location 3,992,865 – 3,992,968
Length 103
Max. P 0.813984
window2210

overview

Window 0

Location 3,992,865 – 3,992,968
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 81.26
Mean single sequence MFE -48.38
Consensus MFE -35.07
Energy contribution -38.06
Covariance contribution 2.99
Combinations/Pair 1.08
Mean z-score -1.85
Structure conservation index 0.72
SVM decision value 0.66
SVM RNA-class probability 0.813984
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3992865 103 + 27905053
GUACGCCUGCGCCGUUCCGUCGAACAGUCCGUUCGAGGAUGUGGCUGCCGAGGCGGCUACGGCGGCAGACAGGGAAGCUGCUGCGGCGGAGGACGAGGCGGAU
((.(((((.((((..(((.((((((.....)))))))))(((((((((....)))))))))(((((((.(......)))))))))))).))).))..)).... ( -53.60)
>DroSec_CAF1 39184 103 + 1
GUACGCCUGCGCCGUUCCGUCGAACAGUCCGUUCGAGGAUGUGGCUGCGGAGGCGGCUACGGCGGCGGACAGGGAAGCUGCUGCGGCGGAGGACGAGGCGGAU
((.(((((.((((..(((.((((((.....)))))))))(((((((((....)))))))))(((((((.(......)))))))))))).))).))..)).... ( -51.60)
>DroEre_CAF1 40122 103 + 1
GUACGCCUGCGCCGUUCCGUCGAACAAUCCGUUCGAGGAUGUGGCUGCGGAGGCGGCUACGGCGGCGGACAGGGAUGCUGCUGCGGCGGCGGACGAGGCGGAU
...(((((.(((((((((.((((((.....)))))))))(((((((((....)))))))))(((((((.((....))))))))).))))))....)))))... ( -54.80)
>DroWil_CAF1 50636 79 + 1
GUGGGCCUGAGCCGUGCCAUCGAACAGGCCAUUCGAGGUGGCCGAUGCUGAGCCGG------AGGUGGA------------UGCGGAGGCGGAGGAG------
....((((...((((((((((.....((((((.....))))))....(((...)))------.))))).------------))))))))).......------ ( -28.50)
>DroYak_CAF1 41637 103 + 1
GUACGCCUGCGCCGUGCCGUCGAACAAUCCGUUCGAGGAUGUGGCUGCGGAGGCGGCUACGGCGGCGGACAGGGAUGCUGCUGCGGCGGAGGACGAGGCGGAU
...(((((.((((.((((.((((((.....))))))...(((((((((....)))))))))(((((((.((....)))))))))))))..)).)))))))... ( -53.40)
>consensus
GUACGCCUGCGCCGUUCCGUCGAACAGUCCGUUCGAGGAUGUGGCUGCGGAGGCGGCUACGGCGGCGGACAGGGAAGCUGCUGCGGCGGAGGACGAGGCGGAU
...(((((.((((..(((.((((((.....)))))))))(((((((((....)))))))))((.((((.(((.....))))))).))...)).)))))))... (-35.07 = -38.06 +   2.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:27 2006