Locus 135

Sequence ID 3R_DroMel_CAF1
Location 734,824 – 734,936
Length 112
Max. P 0.770433
window218

overview

Window 8

Location 734,824 – 734,936
Length 112
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.61
Mean single sequence MFE -34.25
Consensus MFE -22.96
Energy contribution -23.16
Covariance contribution 0.20
Combinations/Pair 1.42
Mean z-score -1.41
Structure conservation index 0.67
SVM decision value 0.53
SVM RNA-class probability 0.770433
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 734824 112 - 27905053
UUUUCAACAAGGUCACCCAAGCUUAGGGCAUCUGCCGUAGCUGCCACCUUUGCCAGGACAUCCUUUCUGCAA---A----GAGUGAAGUUGGUGAAUGGGUACGCCCUUGGCUUAGGUA
..............(((.(((((.(((((((((((((..(((..(((((((((.((((......))))))))---)----).))).)))))))....))))..))))).))))).))). ( -38.70)
>DroSec_CAF1 2296 112 - 1
UUUUCAACAAGGUCACCCAAGCUUAAGGCAUCUGCCGUAGCUGCCACCUUGGCCAGGACAUCCUUUCUGCAA---A----GAGCGGAGUUGGUGAAUGGGUACGCCCUUGAGUAAAGUA
.......(((((.((((((((((...(((....)))..))))(((.....))).....((((..((((((..---.----..))))))..))))..)))))..).)))))......... ( -37.70)
>DroSim_CAF1 2295 112 - 1
UUUUCAACAAGGUCACCCAAGCUUAAGGCAUCUGCCGUAGCUGCCACCUUGGCCAGGACAUCCUUUCUGCAA---A----GAGCGGAGUUGGUGAAUGGGUACGCCCUUGAGUAAAGUA
.......(((((.((((((((((...(((....)))..))))(((.....))).....((((..((((((..---.----..))))))..))))..)))))..).)))))......... ( -37.70)
>DroEre_CAF1 2366 107 - 1
UUAUCAACAAGGUCGCCCAAGCUUAGGGCAUCUGCCGUAGCUGCCACCUUGGCCAGGACAUCGCUCCUGCAA---A----GAACGGAGUUGGUUAAUGGGCACGCCGUUGGAU-----A
...(((((..(((.(((((((((.(.(((....))).)))))(((.....)))...(((...(((((.....---.----....)))))..)))..)))))..))))))))..-----. ( -35.60)
>DroYak_CAF1 2413 107 - 1
UUAUCUACGAGGUCACCCAAGCUUAGGGCAUCUGCCGUAGUUGCCACCUUGGCCAGGAGAUCCUUUCUGUAA---A----GAGCGAAGUUGGUAAAUGAGUUCACCCUUGGGU-----A
..............(((((((.(((.(((....))).)))((((((.(((.((.(((....))).(((....---)----)))).))).))))))...........)))))))-----. ( -32.10)
>DroPer_CAF1 6063 117 - 1
UUAUCUAUCAUAUCGCCAAUACUAAGGGCAUCCGCAGUGGCUGCCACUUUGCCCAGAAUAUCCUUUCUGAAACAAAAGAUGAUAAAAGUUAAUAAACUGAUUCCUAAUAGAGG--AUUU
(((((.(((................(((((.....(((((...))))).)))))((((......)))).........)))))))).((((....))))...((((.....)))--)... ( -23.70)
>consensus
UUAUCAACAAGGUCACCCAAGCUUAGGGCAUCUGCCGUAGCUGCCACCUUGGCCAGGACAUCCUUUCUGCAA___A____GAGCGAAGUUGGUGAAUGGGUACGCCCUUGAGU__AGUA
.......(((((..(((((((((...(((....)))..))))((((.(((.(((((((......))))).............)).))).))))...)))))....)))))......... (-22.96 = -23.16 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:03 2006