Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,966,662 – 3,966,780 |
Length | 118 |
Max. P | 0.610810 |
Location | 3,966,662 – 3,966,780 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 84.62 |
Mean single sequence MFE | -27.83 |
Consensus MFE | -25.57 |
Energy contribution | -25.57 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.96 |
Structure conservation index | 0.92 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3966662 118 + 27905053 AACCCAAAAAUUGUAAAAAGGUAUAGUUCCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGAUGAGUUUACGAAAG ..........(((((((..((.......))(.((((((((((.......))))).....((((((.....)))))).((((........))))..))))).)......)))))))... ( -29.10) >DroSim_CAF1 14852 115 + 1 AUC-C-AAAAUUGUAAAAAA-UUCAAUUCCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGAUGAAAUUACAAAAG ...-.-....((((((....-((((....((.((((((((((.......))))).....((((((.....)))))).((((........))))..))))).)).)))).))))))... ( -28.90) >DroEre_CAF1 13511 103 + 1 -------------AAAAAAA-U-UUUUUGCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGAUGAGCUUACGAAAA -------------.......-.-......((.((((((((((.......))))).....((((((.....)))))).((((........))))..))))).))............... ( -25.50) >consensus A_C_C_AAAAUUGUAAAAAA_U_UAAUUCCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGAUGAGAUUACGAAAG .............................((.((((((((((.......))))).....((((((.....)))))).((((........))))..))))).))............... (-25.57 = -25.57 + -0.00)
Location | 3,966,662 – 3,966,780 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 84.62 |
Mean single sequence MFE | -31.13 |
Consensus MFE | -28.40 |
Energy contribution | -28.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.90 |
Structure conservation index | 0.91 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534875 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3966662 118 - 27905053 CUUUCGUAAACUCAUCGGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGGAACUAUACCUUUUUACAAUUUUUGGGUU ........((((((..(((((((((((((..........))))).......(((((....)))))((((.......))))))))))))((.......)).............)))))) ( -31.20) >DroSim_CAF1 14852 115 - 1 CUUUUGUAAUUUCAUCGGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGGAAUUGAA-UUUUUUACAAUUUU-G-GAU ...((((((.(((((((((((((((((((..........))))).......(((((....)))))((((.......))))))))))))))...))))-....))))))....-.-... ( -34.40) >DroEre_CAF1 13511 103 - 1 UUUUCGUAAGCUCAUCGGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGCAAAAA-A-UUUUUUU------------- ...............((((((((((((((..........))))).......(((((....)))))((((.......)))))))))))))......-.-.......------------- ( -27.80) >consensus CUUUCGUAAACUCAUCGGUCCUGUGGCGCAAUGGAUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGGAAAUA_A_UUUUUUACAAUUUU_G_G_U ...............((((((((((((((..........))))).......(((((....)))))((((.......)))))))))))))............................. (-28.40 = -28.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:22 2006