| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,965,871 – 3,966,050 |
| Length | 179 |
| Max. P | 0.962366 |
| Location | 3,965,871 – 3,965,970 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.92 |
| Mean single sequence MFE | -22.40 |
| Consensus MFE | -12.81 |
| Energy contribution | -13.00 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3965871 99 + 27905053 --GUUAU-A------AGUUAUAAGUUAUACGGUAGGUAACGUGUUGCGUAACUUAAAAAGGGCAAAAAAGGCCA---AAAA---UAG------ACGAUCCUGCCAGGAGUCGAACCUGGA --(((.(-(------((((((..((.(((((........))))).)))))))))).....(((.......))).---....---..)------)).......(((((.......))))). ( -24.30) >DroSec_CAF1 12542 97 + 1 AAGUUAAAA------AGUUAUAAGUUAUACG----AUAACGUGUUGUGUGACUUAAAA-CCGCAAAAAAGACAA---AAAA---GAC------UCGAUCCUGCCAGGAGUCGAACCUGGA .........------.(((.(((((((((((----((.....))))))))))))).))-)..............---....---...------.........(((((.......))))). ( -22.10) >DroSim_CAF1 14049 101 + 1 AAGUUAUAAGUUAUGAGUUAUAAGUUAUACG----AUAACGUGUUGUGUGACUUAAAA-CCGCAAAAAAGA--A---CUAU---UAC------UCGAUCCUGCCAGGAGUCGAACCUGGA .((((.....((.((.(((.(((((((((((----((.....))))))))))))).))-))).)).....)--)---))..---...------.........(((((.......))))). ( -25.20) >DroYak_CAF1 13052 100 + 1 ---------------AGCUUAAAGUAGAGCA----AUAA-GAGUUGUGUGAUUUAAAAUACGCAAAAUAGAUAAAACAAAAUAUUACUUAUUUCCGAUCCUGCCAGGAGUCGAACCUGGA ---------------.((((......))))(----((((-(..(((((((........)))))))....((((........)))).))))))..........(((((.......))))). ( -18.00) >consensus __GUUAU_A______AGUUAUAAGUUAUACG____AUAACGUGUUGUGUGACUUAAAA_CCGCAAAAAAGACAA___AAAA___UAC______UCGAUCCUGCCAGGAGUCGAACCUGGA ....................(((((((((((.............)))))))))))...............................................(((((.......))))). (-12.81 = -13.00 + 0.19)
| Location | 3,965,939 – 3,966,050 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.59 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -26.69 |
| Energy contribution | -27.00 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3965939 111 + 27905053 A---UAG------ACGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGUUGAUUCGUAAUGGAAAAAACUAUUUUUUAUU .---..(------(((.((((((((((.......))))).....((((((.....)))))).((((........))))..))))).)))).......(((((((((.....))))))))) ( -30.10) >DroSec_CAF1 12608 111 + 1 A---GAC------UCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGUUGAAUUCUAACGGAAAAAACUACUUUUUAUU .---...------....((((((((((.......))))).....((((((.....)))))).((((........))))..)))))((((((.....)))))).................. ( -29.50) >DroSim_CAF1 14119 111 + 1 U---UAC------UCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGUUGAAUUAUAACGGAAAAAAAUACUUUUUAUU .---...------....((((((((((.......))))).....((((((.....)))))).((((........))))..)))))((((((.....)))))).................. ( -28.80) >DroYak_CAF1 13112 120 + 1 AUAUUACUUAUUUCCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGUUGAAAUCUCACGAAAAUAACUUUUCUUCAUA .........(((((((.((((((((((.......))))).....((((((.....)))))).((((........))))..))))).))..))))).....(((((....)))))...... ( -27.80) >consensus A___UAC______UCGAUCCUGCCAGGAGUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGUUGAAUUCUAACGGAAAAAACUACUUUUUAUU .................((((((((((.......))))).....((((((.....)))))).((((........))))..)))))((((((.....)))))).................. (-26.69 = -27.00 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:19 2006