| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,965,633 – 3,965,727 |
| Length | 94 |
| Max. P | 0.636484 |
| Location | 3,965,633 – 3,965,727 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.22 |
| Mean single sequence MFE | -19.36 |
| Consensus MFE | -16.00 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.49 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3965633 94 - 27905053 AUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGGAAU---UAAA--UU-UUUUAUUG--------------UUUCUUUAUUGAAAUCAACGG ....((..((((((....).))))).((((((.(((((..(.....)..))))))))))---)...--..-.....(((--------------((((......)))).))))). ( -19.60) >DroSec_CAF1 12314 90 - 1 AUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGGAGA---UAGA--UU-UU-UU-----------------UUCUUUUAUUAAAAUCAACAG ........((((((....).))))).(((((((((.......)))))...)))).....---..((--((-((-..-----------------(......)..))))))..... ( -18.70) >DroSim_CAF1 13820 91 - 1 AUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGGAGA---UAGA--UU-UUUUU-----------------UUCUCUUAAUAAAAUCAACAG ........((((((....).))))).(((((((((.......)))))...))))(((((---.(((--..-..)))-----------------.)))))............... ( -20.80) >DroYak_CAF1 12773 109 - 1 AUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGAACA---UAUU--UUAUUUUAUUAUUUUGACCUUUAUUUUCUUUUACCGAAAUCCUUAA ................((((..(((((((.(((((.......))))).(((.(((((.(---((..--.........)))))))))))..)))))))..).))).......... ( -18.40) >DroMoj_CAF1 17000 93 - 1 AUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGAAUUUUUUGAAAGUUUUUUUA------UUAAU------UCAGUUUACU---------AA ........((((((....).))))).(((((((((.......)))))...))))(((((...(((((....)))))------..)))------))........---------.. ( -19.30) >consensus AUAACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCAGGAUCGGAGA___UAAA__UU_UUUUA_________________UUCUUUUACUAAAAUCAACAG ........((((((....).))))).(((((((((.......)))))...))))............................................................ (-16.00 = -16.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:17 2006