Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,943,003 – 3,943,114 |
Length | 111 |
Max. P | 0.944436 |
Location | 3,943,003 – 3,943,114 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 93.16 |
Mean single sequence MFE | -23.93 |
Consensus MFE | -19.82 |
Energy contribution | -20.02 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.83 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944436 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3943003 111 + 27905053 AUACCAUCCACCAUAUAACCCCAUUUGAUCCCAUACCAUCGCCCUGGCAUC----CCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCAUCAGAUGAC .....................((((((((...............(((((..----(..((((.....)))).)..))))).(((((.((....)).)))))....)))))))).. ( -24.00) >DroSec_CAF1 11041 111 + 1 AUUCCAUCCACUAUAUAGCCCCAUUUGAUCCCAUACCAUCGGCCAGGCAUC----CCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCACCAGAUGAC .....................((((((...........(((((((((....----((((.((.(((((....))))).)).))))......)))).)))))......)))))).. ( -25.53) >DroSim_CAF1 11546 111 + 1 AUACCAUCCACCAUAUAGCCCCAUUUGAUCCCAUACCAUCGGCCAGGCAUC----CCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCACCAGAUGAC .....................((((((...........(((((((((....----((((.((.(((((....))))).)).))))......)))).)))))......)))))).. ( -25.53) >DroEre_CAF1 11259 102 + 1 ---------ACCAUAUAGCCCCAUUUGAUCCCAUACCAUCGCCCAGGCAUC----CCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCACCAGAUGAC ---------.....(((((.......(((........)))((....))...----...)))))......((((((((....(((((.((....)).)))))......)))))))) ( -22.30) >DroYak_CAF1 11400 115 + 1 AUACCAUCCACCAUAUAGCCCCAUUUGAUCCCAUACCAUCGCCCAGGCAUCCAUACCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCACCAGAUGAC ..............(((((.......(((........)))((....))..........)))))......((((((((....(((((.((....)).)))))......)))))))) ( -22.30) >consensus AUACCAUCCACCAUAUAGCCCCAUUUGAUCCCAUACCAUCGCCCAGGCAUC____CCAGCUGUCAGACAGUCGUCUGCCACUUGGCCCACUUCUGAGCCGAAAUCACCAGAUGAC ..............(((((.......(((.((.............)).))).......)))))......((((((((....(((((.((....)).)))))......)))))))) (-19.82 = -20.02 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:05 2006