Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,938,454 – 3,938,562 |
Length | 108 |
Max. P | 0.906413 |
Location | 3,938,454 – 3,938,562 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 91.38 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -23.02 |
Energy contribution | -21.86 |
Covariance contribution | -1.16 |
Combinations/Pair | 1.25 |
Mean z-score | -1.45 |
Structure conservation index | 0.91 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906413 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3938454 108 + 27905053 AAGUCAAAGUAAUUUCCAACGUGGAAUACAUGUACAUAUCUAUCCAACUCCCUCGCUCCCAUGGAGGCAAUUGGGGUGCGUUGAUAAGGAGCAAUGCUCCUUCCACCU ..(((((.(((.......(((((.....))))).........(((((...((((.(......)))))...))))).))).)))))(((((((...)))))))...... ( -27.90) >DroSec_CAF1 6545 104 + 1 GAAUCAAAGUAAUUUUCAACAUGGAAUGCAUGU----AUCUAUCCAACUCCCUCGCUCCCACGAAGACAAUUGGGGUGUGUUGAUAAGGAGCAAUGCUCCUUCCACCU ..(((((...........(((((.....)))))----................(((.(((.(((......)))))).))))))))(((((((...)))))))...... ( -23.60) >DroSim_CAF1 6998 104 + 1 AAAUCAAAGUAAUUUCCAACGUGGAAUGCAUGU----AUCUAUCCAACUCCCUCGCUCCCACGAAGACAAUUGGGGUGUGUUGAUAAGGAGCAAUGCUCCUUCCACCU ....................((((((.((((((----.(((...((((.....(((.((((..........))))))).))))...))).)).))))...)))))).. ( -24.30) >DroEre_CAF1 6694 104 + 1 AAAUCAAAGUAAUUUCCACCGUGGAAUGCAUGU----AUCUAUCCCACUCCCUCGCUCCCAUUAAGACAAUUAGGGUGUGUUGAUAAGGAGCAAUGCUCCUUCCACCU ....................((((((.......----...((((.(((.((((...................)))).)))..)))).(((((...))))))))))).. ( -23.61) >DroYak_CAF1 6775 104 + 1 AAAUCAAAGUAACUUCCACCGUGGAAUGCAUGU----AUCUAUCUUACUCCCUCGCUCCCAUGGACACAAUUAGGGUGUGUUGAUAAGGAGCAAUGCUCCUUCCACCU ....................((((((.((((((----(.......)))......(((((.((.((((((.......)))))).))..))))).))))...)))))).. ( -27.60) >consensus AAAUCAAAGUAAUUUCCAACGUGGAAUGCAUGU____AUCUAUCCAACUCCCUCGCUCCCAUGAAGACAAUUGGGGUGUGUUGAUAAGGAGCAAUGCUCCUUCCACCU ..(((((.(((..((((.....)))))))........................(((.(((.(((......)))))).))))))))(((((((...)))))))...... (-23.02 = -21.86 + -1.16)
Location | 3,938,454 – 3,938,562 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 91.38 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -25.76 |
Energy contribution | -25.04 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.15 |
Mean z-score | -1.25 |
Structure conservation index | 0.86 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565195 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3938454 108 - 27905053 AGGUGGAAGGAGCAUUGCUCCUUAUCAACGCACCCCAAUUGCCUCCAUGGGAGCGAGGGAGUUGGAUAGAUAUGUACAUGUAUUCCACGUUGGAAAUUACUUUGACUU ..(((((((((((...))))).............((((((.(((((......).)))).)))))).................))))))((..((......))..)).. ( -32.60) >DroSec_CAF1 6545 104 - 1 AGGUGGAAGGAGCAUUGCUCCUUAUCAACACACCCCAAUUGUCUUCGUGGGAGCGAGGGAGUUGGAUAGAU----ACAUGCAUUCCAUGUUGAAAAUUACUUUGAUUC .((((.(((((((...))))))).......))))((((((.(((((((....)))))))))))))......----(((((.....))))).................. ( -29.60) >DroSim_CAF1 6998 104 - 1 AGGUGGAAGGAGCAUUGCUCCUUAUCAACACACCCCAAUUGUCUUCGUGGGAGCGAGGGAGUUGGAUAGAU----ACAUGCAUUCCACGUUGGAAAUUACUUUGAUUU .((((.(((((((...))))))).......))))((((((.(((((((....)))))))))))))......----.......((((.....))))............. ( -30.60) >DroEre_CAF1 6694 104 - 1 AGGUGGAAGGAGCAUUGCUCCUUAUCAACACACCCUAAUUGUCUUAAUGGGAGCGAGGGAGUGGGAUAGAU----ACAUGCAUUCCACGGUGGAAAUUACUUUGAUUU ..(((((((((((...)))))(((((..(((.((((..((.((.....)).))..)))).))).)))))..----.......)))))).................... ( -29.60) >DroYak_CAF1 6775 104 - 1 AGGUGGAAGGAGCAUUGCUCCUUAUCAACACACCCUAAUUGUGUCCAUGGGAGCGAGGGAGUAAGAUAGAU----ACAUGCAUUCCACGGUGGAAGUUACUUUGAUUU ..((((((...(((((((((((.....(((((.......)))))....))))))))....(((.......)----)).))).))))))(((.((((...)))).))). ( -28.10) >consensus AGGUGGAAGGAGCAUUGCUCCUUAUCAACACACCCCAAUUGUCUUCAUGGGAGCGAGGGAGUUGGAUAGAU____ACAUGCAUUCCACGUUGGAAAUUACUUUGAUUU ..(((((((((((...)))))(((((...((.(((...((((..(....)..))))))).))..))))).............)))))).................... (-25.76 = -25.04 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:04 2006