Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,936,340 – 3,936,445 |
Length | 105 |
Max. P | 0.886066 |
Location | 3,936,340 – 3,936,445 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -34.22 |
Consensus MFE | -29.98 |
Energy contribution | -30.48 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.88 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3936340 105 + 27905053 CUAUGCCUCUGUGUGUGGCAUGACUCAUGCAACAGCAACAGAGGCCCCAGCAGACGAAUCCAAUCGAAACGAAACGAAAACGCUCCGCGGUGGUGGAGUAGGUGA ....((((((((.(((.(((((...))))).)))...))))))))..((.(...(((......)))...............(((((((....))))))).).)). ( -35.40) >DroSec_CAF1 4516 100 + 1 CUAUGCCUCUGUGUGUGGCAUGACUCAUGCAACAGCAACAGAGGCCCCAGCAGACGAAUCCAAUCGAAACGA-----AAACGCUCCGCGGUGGUGGAGUAGGUGA ....((((((((.(((.(((((...))))).)))...))))))))..((.(...(((......)))......-----....(((((((....))))))).).)). ( -35.40) >DroEre_CAF1 4691 100 + 1 CUAUGCCUCUGUGUGUGGCAUGACUCAUGCAACAGCAACAGAGGCCCCAGCAGACGAAUCCAAUCGAAA-----CGAAAACGCUGCGCGGCGGUGGCGCAGGAGG ....((((((((.(((.(((((...))))).)))...)))))))).((......(((......)))...-----........((((((.......))))))..)) ( -34.40) >DroYak_CAF1 4755 105 + 1 CUAUGCCUCUGUGUGUGGCAUGACUCAUGCAACAACAACAGAGGCCCCAGCAGACGAAUCCAAUCGAAACGAAACGAAAACGCACCGCGGUGGUGGAGAAGAAGG ....((((((((.(((.(((((...))))).)))...)))))))).(((.((..(((......)))..............(((...))).)).)))......... ( -31.70) >consensus CUAUGCCUCUGUGUGUGGCAUGACUCAUGCAACAGCAACAGAGGCCCCAGCAGACGAAUCCAAUCGAAACGA__CGAAAACGCUCCGCGGUGGUGGAGUAGGAGA ((((((((((((.(((.(((((...))))).)))...)))))))).(((.(...(((......)))..............(((...)))..).))).)))).... (-29.98 = -30.48 + 0.50)
Location | 3,936,340 – 3,936,445 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -36.80 |
Consensus MFE | -31.00 |
Energy contribution | -32.00 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.84 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886066 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3936340 105 - 27905053 UCACCUACUCCACCACCGCGGAGCGUUUUCGUUUCGUUUCGAUUGGAUUCGUCUGCUGGGGCCUCUGUUGCUGUUGCAUGAGUCAUGCCACACACAGAGGCAUAG ............((.(.(((((.((..((((..(((...))).))))..))))))).)))((((((((.(.(((.(((((...))))).)))))))))))).... ( -37.10) >DroSec_CAF1 4516 100 - 1 UCACCUACUCCACCACCGCGGAGCGUUU-----UCGUUUCGAUUGGAUUCGUCUGCUGGGGCCUCUGUUGCUGUUGCAUGAGUCAUGCCACACACAGAGGCAUAG ............((.(.(((((.((..(-----(((.......))))..))))))).)))((((((((.(.(((.(((((...))))).)))))))))))).... ( -35.90) >DroEre_CAF1 4691 100 - 1 CCUCCUGCGCCACCGCCGCGCAGCGUUUUCG-----UUUCGAUUGGAUUCGUCUGCUGGGGCCUCUGUUGCUGUUGCAUGAGUCAUGCCACACACAGAGGCAUAG ...(((((((....).)))((((((..((((-----.......))))..)).)))).)))((((((((.(.(((.(((((...))))).)))))))))))).... ( -37.70) >DroYak_CAF1 4755 105 - 1 CCUUCUUCUCCACCACCGCGGUGCGUUUUCGUUUCGUUUCGAUUGGAUUCGUCUGCUGGGGCCUCUGUUGUUGUUGCAUGAGUCAUGCCACACACAGAGGCAUAG ............((.(.((((.(((..((((..(((...))).))))..))))))).)))((((((((.((.((.(((((...))))).)))))))))))).... ( -36.50) >consensus CCACCUACUCCACCACCGCGGAGCGUUUUCG__UCGUUUCGAUUGGAUUCGUCUGCUGGGGCCUCUGUUGCUGUUGCAUGAGUCAUGCCACACACAGAGGCAUAG ............((.(.((((.(((..((((............))))..))))))).)))((((((((.(.(((.(((((...))))).)))))))))))).... (-31.00 = -32.00 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:02 2006