Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,931,857 – 3,931,950 |
Length | 93 |
Max. P | 0.805154 |
Location | 3,931,857 – 3,931,950 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 95.10 |
Mean single sequence MFE | -19.51 |
Consensus MFE | -17.38 |
Energy contribution | -16.66 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.18 |
Mean z-score | -1.35 |
Structure conservation index | 0.89 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3931857 93 - 27905053 AA--GAGAGAGGGAUUAAUACGUUCUCCCUGUCCCGCUCUUUUGAUUGGUUUGAGUGUAAUCUUAAAUUGUACGAUUUUUCUUAUUGCUUAUUUC ((--(((((.(((((...............))))).)))))))(((.(((.((((...((((.((.....)).))))...))))..))).))).. ( -18.76) >DroSec_CAF1 118 93 - 1 AA--GAGAGAGGGAUUAAUACGUUCUCCCUGUCCCGUUCUUUUGAUUGGUUUAAGUGUAAUCUUAAAUUGUACGAUUUUUCUUAUUGCUUAUUUC ((--(((((((((((...............)))))......(((..(((((((((......)))))))))..)))))))))))............ ( -16.36) >DroSim_CAF1 121 93 - 1 AA--GAGAGAGGGAUUAAUACGUUCUCCCUGUCCCGCUCUUUUGAUUGGUUUAAGUGUAAUCUUAAAUUGUACGAUUUUUCUUAUUGCUUAUUUC ((--(((((.(((((...............))))).)))))))(((.(((.((((...((((.((.....)).))))...))))..))).))).. ( -18.66) >DroEre_CAF1 135 93 - 1 GA--GAGAGAGGGAUUAAUUCGUUCUCCCUGUCCCGCUCUCUUGAUUGGUUUAAGUGUAAUCUUAAAUUGUACGAUUUUUCUUAUUGCUUAUUUC ((--(((((.(((((...............))))).)))))))(((.(((.((((...((((.((.....)).))))...))))..))).))).. ( -21.66) >DroYak_CAF1 274 95 - 1 GACAGAGAGAGGGAUUAAUUCGUUUUCCCUGUCUCGCUCUCUUGAUUGGUUUAAGUGUAAUCUUAAAUUGUACGAGUUUUCUUAUUGCUUAUUUC ....((((.(((((...........))))).)))).....((((..(((((((((......)))))))))..))))................... ( -22.10) >consensus AA__GAGAGAGGGAUUAAUACGUUCUCCCUGUCCCGCUCUUUUGAUUGGUUUAAGUGUAAUCUUAAAUUGUACGAUUUUUCUUAUUGCUUAUUUC ....(((((.(((((...............))))).)))))(((..(((((((((......)))))))))..))).................... (-17.38 = -16.66 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:58 2006