Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,908,650 – 3,908,755 |
Length | 105 |
Max. P | 0.687911 |
Location | 3,908,650 – 3,908,755 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 85.77 |
Mean single sequence MFE | -35.70 |
Consensus MFE | -30.10 |
Energy contribution | -31.38 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.14 |
Mean z-score | -1.76 |
Structure conservation index | 0.84 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3908650 105 + 27905053 UCCACCAUGUCGGGAUCCAGUUCCGA-CUCGGAGA---UUCUUGGUCCUGUUUUGCCACCAUUUGCACUGUGGCAGACGAUCCUGAUAGCCAUAUGCCUGGCGAUCUGU .......(((((((((((((..((((-........---...))))..))).((((((((..........)))))))).))))))))))((((......))))....... ( -35.10) >DroSec_CAF1 32072 105 + 1 UCCACCAUGUCGGGAUCCAGUUCCGA-CUCGGAGA---UUCUUGGUCCUGUUCUGCCACCAUUUGCCCUGUGGCAGACGAUCCUGAUAGCCAUAUGCCUGGCCAUUUGC .......(((((((((((((..((((-........---...))))..))).((((((((..........)))))))).))))))))))((((......))))....... ( -36.80) >DroSim_CAF1 32524 105 + 1 UCCACCAUGUCGGGAUCCAGUUCCGA-CUCGGAGA---UUCUUGGUCCUGUUCUGCCACCAUUUGCCCUGUGGCAGACGAUCCUGAUAGCCAUAUGCCUGGCGAUCUGU .......(((((((((((((..((((-........---...))))..))).((((((((..........)))))))).))))))))))((((......))))....... ( -37.70) >DroEre_CAF1 32526 105 + 1 UCCACCAUGUCGGGAGCCAGUUCCGA-CUCGGAGA---UCCUUGGCCCUGUUCUGCCACCAUUUGCCCUGUGGCAGACGAUCCUGAUAGCCAUAUGCCUGGCCAUCUGC .......((((((((((((((((((.-..))))).---...))))).....((((((((..........))))))))...))))))))((((......))))....... ( -36.20) >DroYak_CAF1 33956 105 + 1 UCCACCAUGUCGGGAUCCAAUUCCGA-CUCGGAGA---UCCUUGGUCCUGUUCUGCCACCAUUUGCCCUGUGGCAGACGAUCCUGAUAGCCAUCUGUCUGGCCAUCUGC .......((((((((((.......((-((.((...---.))..))))....((((((((..........)))))))).))))))))))((((......))))....... ( -36.00) >DroPer_CAF1 44646 105 + 1 ACUGCCAC---GG-ACACGGACCUGAGCUCGGACAAUGUCCUGGUGCCCGUGCUGCCGCCGUUCGCCCUCUGGCAGACGAUCUUCAUUGCCAUCUGUCUGGCCAUUUGC .((((((.---((-(((..(.((.......)).)..))))).((((..((.((....))))..))))...))))))............((((......))))....... ( -32.40) >consensus UCCACCAUGUCGGGAUCCAGUUCCGA_CUCGGAGA___UCCUUGGUCCUGUUCUGCCACCAUUUGCCCUGUGGCAGACGAUCCUGAUAGCCAUAUGCCUGGCCAUCUGC .......((((((((((...(((((....)))))...............((.(((((((..........)))))))))))))))))))((((......))))....... (-30.10 = -31.38 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:55 2006