Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 723,656 – 723,757 |
Length | 101 |
Max. P | 0.848625 |
Location | 723,656 – 723,757 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 75.46 |
Mean single sequence MFE | -15.97 |
Consensus MFE | -10.06 |
Energy contribution | -10.58 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.09 |
Mean z-score | -1.57 |
Structure conservation index | 0.63 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 723656 101 + 27905053 GCACACACCCUCACCCAGUUUGGAACUCGAUAAGCUGGA-AAUCUCCCACGUUCCACUAAGGAACCC-AACGAAGCCAAACCAGCAAUUACACAGCGAAUUAA ..........((.....((((((...(((.......(((-....)))...(((((.....)))))..-..)))..))))))..((.........))))..... ( -18.10) >DroPse_CAF1 140294 102 + 1 AUAUAUGCACUCCCCCAAUGAAGUGUUCGAUAAGCGGGAAAAUCUCCCACGUUCCACUAAGGAACCC-AACGAAACCAAAUCAACAAUUACACAGCGAAUUAA .(((..(((((.(......).)))))...))).((((((.....))))..(((((.....)))))..-..........................))....... ( -18.60) >DroEre_CAF1 133762 79 + 1 G----------------------AACUUGAUAAGCGGGA-AAUCUCCCACGUUCCACUGAGCCACCC-AACGAAACCAAGUCAGCAAUUACACAGCGAAUUAA (----------------------(.((((....(.((((-....)))).)((((....)))).....-........)))))).((.........))....... ( -12.80) >DroYak_CAF1 146798 101 + 1 GCACAUACCCUCACCCAGUAUGGAACUCGAUAAGCGGAA-AAUCUCCCACGUUCCACUAAGGAACCA-AACUAAACCAAAUCAGCAAUUACACAGCAAAUAAA ((.(((((.........)))))...........(((((.-....)))...(((((.....)))))..-...............)).........))....... ( -15.60) >DroAna_CAF1 135295 80 + 1 -----------------------AGAGUGAUAAGCGGGAAAAUCUCCCACGUUCUAUUAAGGAACCCGAACGAAACCAAAUCAACAAUUACCCAGCGAAUUAA -----------------------....((((..((((((.....)))).(((((.............)))))......................))..)))). ( -13.62) >DroPer_CAF1 140489 101 + 1 AUGUAUGCAC-CCCCCAAUGAAGUGUUCGAUAAGCGGGAAAAUCUCCCACGUUCCACUAAGGAACCC-AACGAAACCAAAUCAACAAUUACACAGCGAAUUAA ..........-.......(((..((((((....(.((((.....)))).)(((((.....)))))..-..))))..))..))).................... ( -17.10) >consensus G_A_AU_C_C_C_CCCA_U___GAACUCGAUAAGCGGGA_AAUCUCCCACGUUCCACUAAGGAACCC_AACGAAACCAAAUCAACAAUUACACAGCGAAUUAA .................................((((((.....))))..(((((.....))))).............................))....... (-10.06 = -10.58 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:00 2006