Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,903,076 – 3,903,166 |
Length | 90 |
Max. P | 0.873471 |
Location | 3,903,076 – 3,903,166 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 78.29 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -18.75 |
Energy contribution | -18.48 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.23 |
Mean z-score | -2.04 |
Structure conservation index | 0.58 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3903076 90 + 27905053 -----------------GUGUAUGU-----UU-CAUGCCACAAAAGACAACGCUAAGUGGCCUG-GGGCGCAAUUUUAGC-CAUUGGCGCUCGUUAAAUUUGCAUGUGCAUGCCU -----------------((((((((-----..-((.(((((...((......))..))))).))-..))((((.((((((-...........)))))).))))..)))))).... ( -26.80) >DroVir_CAF1 40115 95 + 1 U----------------GCUUGUUUGAUGAUG-UUUGCCACAA-AGACAACGCCACGUGGCCUAUGGGCGCAAUUUU-GC-CAUUGGCGCUCGUUAAAUUUGCAUGCGGAAGCGC (----------------((..(((((((((((-(((.......-))))).(((((.((((((....)))(((....)-))-)))))))).)))))))))..))).((....)).. ( -33.90) >DroSec_CAF1 26298 90 + 1 -----------------AUGUAUGU-----UC-CAUGCCACAAAAGACAACGCUAAGUGGCCUG-GGGCGCAAUUUUAGC-CAUUGGCGCUCGUUAAAUUUGCAUGUGCAUGCCC -----------------((((((((-----((-((.(((((...((......))..))))).))-))))((((.((((((-...........)))))).))))..)))))).... ( -28.30) >DroEre_CAF1 26180 91 + 1 U----------------GUGUGUGC-----UU-CAUGCCACAAAAGACAACGCUAAGUGGCCUG-GGGCGCAAUUUUAGC-CAUUGGCGCUCGUUAAAUUUGCAUGUGCAUGCCU .----------------((((((((-----((-((.(((((...((......))..))))).))-))))((((.((((((-...........)))))).))))....)))))).. ( -28.70) >DroMoj_CAF1 40771 96 + 1 U----------------GUUUGUAUGAUGAUG-UUUGCCACAA-AGGCAACGUCACGUGGCCUGUGGGCGCAAUUUC-GCCCAUUGGCGCUCGUUAAAUUUGCAUGCGGAAGCGC .----------------.((((((((..((((-((.(((....-.)))))))))(((.((((.(((((((......)-)))))).))).).)))........))))))))..... ( -38.90) >DroAna_CAF1 27569 108 + 1 UACAUAUGUAUGUGCGAGUGUAUGU-----GCUGCUGCCACAAAAGACAACGCUAAGUGGCCUG-GGGCGCAAUUUUUGC-CAUUGGCGCUCGUUAAAUUUGCAUGUGCAUGCUG ....(((((((((((((((...(((-----(((.(.(((((...((......))..)))))..)-.))))))......((-(...))).........)))))))))))))))... ( -37.10) >consensus U________________GUGUAUGU_____UC_CAUGCCACAAAAGACAACGCUAAGUGGCCUG_GGGCGCAAUUUUAGC_CAUUGGCGCUCGUUAAAUUUGCAUGUGCAUGCCC .................((((((((...........(((((...............)))))....(((((((((........))).))))))...........)))))))).... (-18.75 = -18.48 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:53 2006