Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,902,922 – 3,903,028 |
Length | 106 |
Max. P | 0.606122 |
Location | 3,902,922 – 3,903,028 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 91.90 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -22.99 |
Energy contribution | -23.18 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.04 |
Mean z-score | -1.55 |
Structure conservation index | 0.86 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3902922 106 - 27905053 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAA------AAACC--CCCCGGGCACCAUAACAAAAUGGUAAGCGACACUUGCUACAAACAC ....((((..(((((((((((((.((((.((...)).))))..))))))......------...((--(...))).(((((......))))).))))))).))))......... ( -25.80) >DroSec_CAF1 26144 106 - 1 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAU------AAACC--CCCGGGGCACCAUAACAAAAUGGUAAGCGACACUUGCUACAAGCUC ....((((..(((((((((((((.((((.((...)).))))..))))))......------...((--....))..(((((......))))).))))))).))))......... ( -26.40) >DroSim_CAF1 26562 107 - 1 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAAA-----AAACC--CCCCGGGCACCAUAACAAAAUGGUAAGCGACACUUGCUACAAGCAC ....((((..(((((((((((((.((((.((...)).))))..)))))).......-----...((--(...))).(((((......))))).))))))).))))......... ( -25.80) >DroEre_CAF1 26024 107 - 1 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAA------AAACC-CCCACGGGCACCAUAACAAAAUGGUAAGCGACACUUGCUACAAGCAU ....((((..(((((((((((((.((((.((...)).))))..))))))......------...((-(....))).(((((......))))).))))))).))))......... ( -26.80) >DroYak_CAF1 27689 108 - 1 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAGGGCAUAAAA------AAAUCCCCCCUGGGCACCAUAACAAAAUGGUAAGCGACACUUGCGACAAGCAG ...(((.(((((..((((((.........))))))))))).(((((.((......------....(((....))).(((((......)))))..))....))))).....))). ( -28.40) >DroAna_CAF1 27397 113 - 1 CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAAAAGAAUAAACC-CCCCGUGGCACAACAACAAAAUGGUAAGCGACACUUGCCACGAGGAU ((.(((.(((((..((((((.........))))))))))).))).))...................-((.(((((((...((......))((.....))...))))))).)).. ( -27.90) >consensus CUAUGCAAUCUGUUGUUGCUUUUAUAUCCGGCAGCCAGAUAGCGAAGGCAUAAAA______AAACC__CCCCGGGCACCAUAACAAAAUGGUAAGCGACACUUGCUACAAGCAC ....((((..(((((((((((((.((((.((...)).))))..))))))...........................(((((......))))).))))))).))))......... (-22.99 = -23.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:52 2006