Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,899,313 – 3,899,404 |
Length | 91 |
Max. P | 0.846245 |
Location | 3,899,313 – 3,899,404 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 90.57 |
Mean single sequence MFE | -23.67 |
Consensus MFE | -20.99 |
Energy contribution | -21.77 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -2.17 |
Structure conservation index | 0.89 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3899313 91 + 27905053 GAAAAACCCACUAUCGAUUCACAUUCCUCAGAAAAAAGGUUUAUCCCAUGGCGAAAGGCAACCGUAUGUUUUUCGCUAGGAGCUGGAAA--------AU .................(((.((((((..........((......)).((((((((((((......)))))))))))))))).))))).--------.. ( -21.30) >DroSec_CAF1 22498 99 + 1 GAAAAAUCCACUAUCGAUGCACAUUCCUCAGAAAAAAGGUGUAUCCCAUAGCGAAAGGCAACCAUAUGUUUUCCGCUAGGAGCUGGAAACAUAUCCCAU ......((((((...(((((((.(((....))).....)))))))((.(((((.((((((......)))))).))))))))).))))............ ( -25.00) >DroSim_CAF1 22933 99 + 1 GAAAAAUCCACUAUCGAUGCACAUUCCUCAGAAAAAAGGUGUAUCCCAUGGCGAAAGGCAACCAUAUGUUUUCCGCUAGGAGCUGGAAACAUAUCCCAU ......((((((...(((((((.(((....))).....)))))))((.(((((.((((((......)))))).))))))))).))))............ ( -24.70) >consensus GAAAAAUCCACUAUCGAUGCACAUUCCUCAGAAAAAAGGUGUAUCCCAUGGCGAAAGGCAACCAUAUGUUUUCCGCUAGGAGCUGGAAACAUAUCCCAU ......((((((...(((((((.(((....))).....)))))))((.(((((.((((((......)))))).))))))))).))))............ (-20.99 = -21.77 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:51 2006