Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,897,699 – 3,897,817 |
Length | 118 |
Max. P | 0.522769 |
Location | 3,897,699 – 3,897,817 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 82.49 |
Mean single sequence MFE | -32.73 |
Consensus MFE | -22.99 |
Energy contribution | -22.67 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.12 |
Mean z-score | -1.63 |
Structure conservation index | 0.70 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3897699 118 + 27905053 CGGACCUCUCUUUCACUCAGUUGGGGCUAUCACCACUUAGCCGCUGUCUUCUUCACUUGUUAUGGAGCUAAUGUUUGCUGGGCGCGCUUUGUACUUUAGCUUUUUAUUAGGGCAGCAU ....((...((.......))..))(((((........)))))((((((..(((((.......)))))((((((...((((((..(.....)..).)))))....)))))))))))).. ( -28.30) >DroEre_CAF1 19742 118 + 1 CGGAGCUCUCUCUCGCUCCGCUCGAGCUAUCGCCACUUAACUGCUGUCUCCUUCACUCGUUAUGGAGCUAAUGUUUGCUGGGCGCGCUUUGCGCUUUAGCAUUUUAUUGGGGCAGCAU ((((((........))))))..(((....))).........(((((((..(((((.......)))))((((((..((((((((((.....)))).))))))...))))))))))))). ( -40.40) >DroYak_CAF1 22442 106 + 1 CGGACCUCUCUUUC----CAC--------UUUCCACUUAGCUGCUGUCUCCCUCACUCGUUAUGGACCUAAUGUUUGCUGGGCGCGCUUUGUGCUUUAGCUUUUUAUUAGGGCAGCAU .(((........))----)..--------..........(((((......((...........)).(((((((...(((((((((.....)))).)))))....)))))))))))).. ( -29.50) >consensus CGGACCUCUCUUUC_CUCCGCU_G_GCUAUCACCACUUAGCUGCUGUCUCCUUCACUCGUUAUGGAGCUAAUGUUUGCUGGGCGCGCUUUGUGCUUUAGCUUUUUAUUAGGGCAGCAU ..........................................(((((((((............))).((((((...(((((((((.....)))).)))))....)))))))))))).. (-22.99 = -22.67 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:50 2006