Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,894,773 – 3,894,875 |
Length | 102 |
Max. P | 0.508456 |
Location | 3,894,773 – 3,894,875 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 88.45 |
Mean single sequence MFE | -20.25 |
Consensus MFE | -15.72 |
Energy contribution | -16.04 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -1.43 |
Structure conservation index | 0.78 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3894773 102 - 27905053 GCAGUCGAAUGAAGUGC-CACAACCUGAGUGCAGAUACC-CAAAAAA--AAAUGAUACAUGACGGCAUACAGCUGCUGUCGAAAUAAUAGUACUUCUUCUAUAAAC--- ......(((.(((((((-......(((....))).....-.......--..........((((((((......))))))))........)))))))))).......--- ( -22.40) >DroSec_CAF1 17977 100 - 1 GCAGUCGAAUGAAGUGC-CACAACCUGACUGCAGAUACA-CAAAAAA--AA--GAUACAUGACGGCAUACAGCUGCUGUCGAAAAAUUAGUACUUCUUGUAUAAAC--- (((((((..((......-..))...))))))).......-.......--..--......((((((((......))))))))........((((.....))))....--- ( -21.50) >DroSim_CAF1 18166 100 - 1 GCAGUCGAAUGAAGUGC-CACAACCUGACUGCAGAUACA-CAAAAAA--AA--GAUACAUGACGGCAUACAGCUGCUGUCGAAAUAAUAGUACUUCUUAUAUAAAC--- ..........(((((((-......(((....))).....-.......--..--......((((((((......))))))))........)))))))..........--- ( -20.50) >DroEre_CAF1 16746 103 - 1 GCAGUCGAAUGAAGUGC-CACAACCU-ACUGCAGAUACA-CAAAAAA-UAA--GAUACAGAACGGCAUACAGCUGCUGUCGAAAUAUUAGUACUUCUGCUUCAAACAUU (((((.(..((......-..))..).-))))).......-.......-...--((..((((((((((......))))))...............))))..))....... ( -16.06) >DroYak_CAF1 18105 104 - 1 GCAGUCGCAUGAGGUGCCCACAACCUGACUGCAGAUACAACAAAAAAGAAA--GAUACAAAACUACAUACAGCUGUUGUCGAAAUAGUAGUACUUCUUUUCUAAAC--- ((((((.....((((.......))))))))))...........((((((((--(........))...(((.((((((.....)))))).))).)))))))......--- ( -20.80) >consensus GCAGUCGAAUGAAGUGC_CACAACCUGACUGCAGAUACA_CAAAAAA__AA__GAUACAUGACGGCAUACAGCUGCUGUCGAAAUAAUAGUACUUCUUCUAUAAAC___ ..........(((((((.......(((....)))..........................(((((((......))))))).........)))))))............. (-15.72 = -16.04 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:44 2006