Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,891,183 – 3,891,287 |
Length | 104 |
Max. P | 0.956796 |
Location | 3,891,183 – 3,891,287 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 93.14 |
Mean single sequence MFE | -34.77 |
Consensus MFE | -31.05 |
Energy contribution | -30.86 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.19 |
Mean z-score | -1.83 |
Structure conservation index | 0.89 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3891183 104 + 27905053 GUGCGUGUGUGGAAACAUGGCAAUUGCCAAGUGCUGACG-UUGAGUGCGCUACACACGAGUGACACUUGUAUACAUC------UCUGCAAGUGUUGAUGUGUCUAUGCC---AU ...(((((((((.....((((....)))).(..((....-...))..).)))))))))...((((((((((......------..))))))))))..............---.. ( -35.10) >DroSec_CAF1 14352 104 + 1 GUGCGUGUGUGGAAACAUGGCAAUUUCCAAGUGCUGACG-UUGAGUGCGCUACACACGAGUGACACUUGUAUACAUC------UCUGCAAGUGUUGAUGUGUCUAUGCC---AU ........(((....)))((((.......(((((..((.-....)))))))(((((....(((((((((((......------..))))))))))).)))))...))))---.. ( -31.20) >DroSim_CAF1 14555 104 + 1 GUGCGUGUGUGGAAACAUGGCAAUUGCCAAGUGCUGACG-UUGAGUGCGCUACACACGAGUGACACUUGUAUACAUC------UCUGCAAGUGUUGAUGUGUCUAUGCC---AU ...(((((((((.....((((....)))).(..((....-...))..).)))))))))...((((((((((......------..))))))))))..............---.. ( -35.10) >DroEre_CAF1 13222 104 + 1 GUGCGUGUGUGGAAACAUGGCAAUUGCCAAGUGCUGACG-UUGAGUGCGCUACACACGAGUGACACUUGUAUACAUC------UCUGCAAGUGUUGAUGUGUCUAUGCC---AU ...(((((((((.....((((....)))).(..((....-...))..).)))))))))...((((((((((......------..))))))))))..............---.. ( -35.10) >DroYak_CAF1 14384 106 + 1 GUGCGUGUGUGGAAACAUGGCAAUUGCCAAGUGCUGACG-UUGAGUGCGCUACACACGAGUGACACUUGUAUACAUCUC----UCUGCAAGUGUUGAUGUGUCUAUGCC---AU ...(((((((((.....((((....)))).(..((....-...))..).)))))))))...((((((((((........----..))))))))))..............---.. ( -34.20) >DroPer_CAF1 28104 113 + 1 GUGCGUGCGUGCUAACAUGGCAAUUGCCAAGUGUUGGCUUUUGAGUGCGCUACACACGAGUGACACUUGUAUACAUCUCUCUCUCUAUGAGUGUUGAUGUGUC-AUGCCACCAU (((((..(..(((((((((((....))))..)))))))......)..))).))....(.(((.((..((.(((((((.(.(((.....))).)..))))))))-))).)))).. ( -37.90) >consensus GUGCGUGUGUGGAAACAUGGCAAUUGCCAAGUGCUGACG_UUGAGUGCGCUACACACGAGUGACACUUGUAUACAUC______UCUGCAAGUGUUGAUGUGUCUAUGCC___AU ...(((((((((.....((((....)))).(..((.(....).))..).)))))))))...((((((((((..............))))))))))................... (-31.05 = -30.86 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:41 2006