Locus 132

Sequence ID 3R_DroMel_CAF1
Location 707,919 – 708,009
Length 90
Max. P 0.999997
window214

overview

Window 4

Location 707,919 – 708,009
Length 90
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 73.12
Mean single sequence MFE -20.83
Consensus MFE -15.42
Energy contribution -15.20
Covariance contribution -0.22
Combinations/Pair 1.20
Mean z-score -3.35
Structure conservation index 0.74
SVM decision value 6.10
SVM RNA-class probability 0.999997
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 707919 90 + 27905053
AGUGUGAUGCUAUAAUGAAAGGCAACUACUUAAGUGGUUGAUUGAGAGGGCACUUUAUUGUA-UUGUAUUGUACUGGCAUUGUAAAGAAAG
((((..(((((((((((((..((((((((....))))))..((....))))..)))))))))-..))))..))))................ ( -21.60)
>DroSec_CAF1 127291 71 + 1
AGUGUGAUACCAUAAUAAAGGGCAACUACUUACUUGUU--------------------AGUACUUGUAUUGUACUGGUAUUGUACAAAAAA
.(((..((((((..((((...((((.((((........--------------------)))).)))).))))..))))))..)))...... ( -19.40)
>DroSim_CAF1 129478 71 + 1
AGUGUGAUACCAUAAUAAAGGGCAACUACUUACUUGGU--------------------AGUACUUGUGUUGUACUGGUAUUGUACAAAAAA
.(((..(((((((((((.(((...((((((.....)))--------------------))).))).)))))...))))))..)))...... ( -21.50)
>consensus
AGUGUGAUACCAUAAUAAAGGGCAACUACUUACUUGGU____________________AGUACUUGUAUUGUACUGGUAUUGUACAAAAAA
.(((..((((((.......((....))................................((((.......))))))))))..)))...... (-15.42 = -15.20 +  -0.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:59 2006