Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 707,919 – 708,009 |
Length | 90 |
Max. P | 0.999997 |
Location | 707,919 – 708,009 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 73.12 |
Mean single sequence MFE | -20.83 |
Consensus MFE | -15.42 |
Energy contribution | -15.20 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.20 |
Mean z-score | -3.35 |
Structure conservation index | 0.74 |
SVM decision value | 6.10 |
SVM RNA-class probability | 0.999997 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 707919 90 + 27905053 AGUGUGAUGCUAUAAUGAAAGGCAACUACUUAAGUGGUUGAUUGAGAGGGCACUUUAUUGUA-UUGUAUUGUACUGGCAUUGUAAAGAAAG ((((..(((((((((((((..((((((((....))))))..((....))))..)))))))))-..))))..))))................ ( -21.60) >DroSec_CAF1 127291 71 + 1 AGUGUGAUACCAUAAUAAAGGGCAACUACUUACUUGUU--------------------AGUACUUGUAUUGUACUGGUAUUGUACAAAAAA .(((..((((((..((((...((((.((((........--------------------)))).)))).))))..))))))..)))...... ( -19.40) >DroSim_CAF1 129478 71 + 1 AGUGUGAUACCAUAAUAAAGGGCAACUACUUACUUGGU--------------------AGUACUUGUGUUGUACUGGUAUUGUACAAAAAA .(((..(((((((((((.(((...((((((.....)))--------------------))).))).)))))...))))))..)))...... ( -21.50) >consensus AGUGUGAUACCAUAAUAAAGGGCAACUACUUACUUGGU____________________AGUACUUGUAUUGUACUGGUAUUGUACAAAAAA .(((..((((((.......((....))................................((((.......))))))))))..)))...... (-15.42 = -15.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:59 2006