Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,889,066 – 3,889,156 |
Length | 90 |
Max. P | 0.821709 |
Location | 3,889,066 – 3,889,156 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 81.50 |
Mean single sequence MFE | -20.68 |
Consensus MFE | -11.98 |
Energy contribution | -14.47 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.08 |
Mean z-score | -2.33 |
Structure conservation index | 0.58 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3889066 90 - 27905053 -AAUUAGAAUUGCUUAGGUAAUUCAUUUCACGUUUUUGUGCCGUCUUUAAGCAUUUGAGAUGCAUGCAUCUUAAGAAGCAUGCUUUGUGAU -.....(((((((....)))))))...(((((((((.((((.........))))..)))))((((((.((....)).))))))...)))). ( -25.60) >DroSec_CAF1 12333 82 - 1 AAAUUAGAAUUGCUUAGGUAAUUCAUUUCA---------GGCGUCUUUAAGCAUUUGAGAUUCAUGCUUCUUAAGAAGCGUGCUUUGUGAU ......(((((((....)))))))((((((---------.((........))...)))))).((((((((....))))))))......... ( -22.30) >DroSim_CAF1 12477 91 - 1 AAAUUAAAAUUGCUUAGGUAAUUCAUUUCAUGUUUUUCUGCCGUCUUUAAGCAUUUGAGAUUCAUGCUUCUUAAGAAGCGUGCUUUGUGAU ........((..(..((.......(((((((((((.............)))))..)))))).((((((((....))))))))))..)..)) ( -17.52) >DroYak_CAF1 12193 84 - 1 AAAAUAGAAUCGCAUAGGAAAUUCAUUUCAUGUUUCUUUAAUGUCUUUAAGCUUUCGAGAU-------UCUUAAGAAGCAUGUUUUGUGAU ........((((((...((((....))))(((((((((....(((((.........)))))-------....)))))))))....)))))) ( -17.30) >consensus AAAUUAGAAUUGCUUAGGUAAUUCAUUUCAUGUUUUU_UGCCGUCUUUAAGCAUUUGAGAUUCAUGCUUCUUAAGAAGCAUGCUUUGUGAU ......(((((((....)))))))...((((...........(((((.........))))).((((((((....))))))))....)))). (-11.98 = -14.47 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:40 2006