Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,878,299 – 3,878,401 |
Length | 102 |
Max. P | 0.567209 |
Location | 3,878,299 – 3,878,401 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 73.99 |
Mean single sequence MFE | -29.27 |
Consensus MFE | -11.16 |
Energy contribution | -12.69 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.26 |
Mean z-score | -1.99 |
Structure conservation index | 0.38 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3878299 102 + 27905053 AAACACGCAUACUUAU----AUAAUGCAAAAAGAACUGUAUGAGCAGAGUGUGCCACUGUCAGGCAA-ACGCUUUGAUGUGUCAAGCGUUCGAUAUGAAG-GCG-GAGA ....((((((.(((((----(((...(.....)...))))))))(((((((((((.......)))..-))))))))))))))...((.(((.....))).-)).-.... ( -27.20) >DroPse_CAF1 12962 88 + 1 --ACACGCAUAUUAAG----AU---GAAAA------------AGGCGAGUGUGCUUUUGUCAGCCGGCGCGCUUUGAUGUGUCGGCCGUUCAAUAGGGGAUACCCAGCA --....((.......(----((---((.((------------(((((....))))))).)))(((((((((......)))))))))...))....(((....))).)). ( -29.50) >DroSec_CAF1 1676 102 + 1 AAACACGCAUACUUAU----AUAAUGCAAAAAGAACUGUAUGAGCAGAGUGUGCCACUGUCAGGCGA-ACGCUUUGAUGUGUCAAGCGUUCGAUAUGAAG-GCG-GAGA ......((((((((..----...(((((........))))).....))))))))(.((.(((..(((-((((((.((....)))))))))))...))).)-).)-.... ( -31.90) >DroSim_CAF1 1681 102 + 1 AAACACGCAUACUUAU----AUAAUGCAAAAAGAACUGUAUGAGCAGAGUGUGCCACUGUCAGGCGA-ACGCUUUGAUGUGUCAAGCGUUCGAUAUGAAG-GCG-GAGA ......((((((((..----...(((((........))))).....))))))))(.((.(((..(((-((((((.((....)))))))))))...))).)-).)-.... ( -31.90) >DroEre_CAF1 408 95 + 1 AAGCACGCACACACACACUCGUAAUACAAAAGGAACUGUAU-----------GCCACUGUCAGGCAA-ACGCUUUGAUGUGUCAAGCGUUCGAUGUGAAG-GCG-GCGG ..((.(((.....((((.(((..(((((........)))))-----------(((.......))).(-((((((.((....))))))))))))))))...-)))-)).. ( -26.20) >DroYak_CAF1 502 100 + 1 AAACACGCA------CACUCAUAAUACAAAAAGUGCUGUAUGAGCCGAGUGUGCCACUGUCAGGCAA-ACGCUUUGAUGUGUCAAGCGUUCGAUAUGGAG-GCG-GAGA ..(((((((------(((((...(((((........))))).....))))))))....(((((((..-..)).)))))))))...((.(((.....))).-)).-.... ( -28.90) >consensus AAACACGCAUACUUAU____AUAAUGCAAAAAGAACUGUAUGAGCAGAGUGUGCCACUGUCAGGCAA_ACGCUUUGAUGUGUCAAGCGUUCGAUAUGAAG_GCG_GAGA ......(((((((..........(((((........)))))......))))))).....(((......((((((.((....))))))))......)))........... (-11.16 = -12.69 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:38 2006