Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,877,930 – 3,878,025 |
Length | 95 |
Max. P | 0.500000 |
Location | 3,877,930 – 3,878,025 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 74.01 |
Mean single sequence MFE | -28.64 |
Consensus MFE | -15.47 |
Energy contribution | -15.95 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.16 |
Mean z-score | -1.61 |
Structure conservation index | 0.54 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3877930 95 - 27905053 CUGCUACUGCGGCUUCUGCUGCUCAUGUGGCUUUUCCUUUUCCCAGUUAAGUCGGCACUAACGACUU----------GUCAUACGUGCGGUUUCAUCCGAGGACA ..(((((.(((((....)))))....)))))...((((.......(.(((((((.......))))))----------).).......(((......))))))).. ( -29.50) >DroPse_CAF1 12504 91 - 1 ---------CUGUUGCUGCUGUUUGUGUGGCUUUUUCUUUUGCCAGUCGAAUCCGCACUAACGACUUGCCAGUUGAUGUCAUACGUGCGGU-----GCGAGGACA ---------.(.((((.(((((.((((((((.((..((...((.(((((............))))).)).))..)).)))))))).)))))-----)))).)... ( -27.80) >DroSec_CAF1 1294 95 - 1 CUGCUACUGCGGCUUCUGCUGCUCAUGUGGCUUUUCCUUUUGCCAGUUAAGUCGGCACUAACGACUU----------GUCAUACGUGCGGUUUCAUCCGAGGACA ..(((((.(((((....)))))....)))))...(((((..((..(((((((((.......))))))----------)....))..))((......))))))).. ( -29.60) >DroAna_CAF1 3331 91 - 1 --------------ACUGCUGCUCGUGUGGCUUUUCCUUUCGCCAGUUAAAUCCGCACUAACGACUUGCCAGUUGAUGUCAUACGUGCGGUUUCUGGCGAGGACA --------------...((..(....)..))...(((..(((((((......((((((...(((((....)))))..(.....)))))))...)))))))))).. ( -32.60) >DroPer_CAF1 15212 91 - 1 ---------NNNNNNNUGCUGUUUGUGUGGCUUUUUCUUUUGCCAGUCGAAUCCGCACUAACGACUUGCCAGUUGAUGUCAUACGUGCGGU-----GCGAGGACA ---------........(((((.((((((((.((..((...((.(((((............))))).)).))..)).)))))))).)))))-----......... ( -23.70) >consensus _________C_G_UUCUGCUGCUCGUGUGGCUUUUCCUUUUGCCAGUUAAAUCCGCACUAACGACUUGCCAGUUGAUGUCAUACGUGCGGUUUC__GCGAGGACA .................(((((.((((((((..........((.((((..............)))).))........)))))))).))))).............. (-15.47 = -15.95 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:37 2006