Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,864,105 – 3,864,217 |
Length | 112 |
Max. P | 0.926628 |
Location | 3,864,105 – 3,864,217 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.17 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -14.72 |
Energy contribution | -15.09 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.05 |
Mean z-score | -2.55 |
Structure conservation index | 0.65 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926628 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3864105 112 - 27905053 C-AUUCAAUUCA-CACACACACUCAUCUUUCAACUCAAAGUUCUGCCAGUUGGGAAGAGGAA------UCUUCCAAAAGGGAAACCACUCGUGCAACCUGAGUUGACACCUGCACCAAUC .-..........-................((((((((..(((.(((.(((..((((((....------))))))....((....))))).))).))).)))))))).............. ( -26.70) >DroSec_CAF1 5199 114 - 1 CCAUUCAAUUCAAUUCACACUCUCAUCUUUCAACUCCGAGUUCUGCCAAUUCGGAUUCCGAA------ACUUCCAAAAGGGAAACCACUCGUGCAACCUGAGUUGACACCUGCACCAAUC ....((((((((.(((((.........((((...((((((((.....))))))))....)))------).........((....))....))).))..)))))))).............. ( -23.90) >DroSim_CAF1 6650 111 - 1 CCAUUCAAUUCAAUUCACACACU---CUUUCAACUCCAAGUUCUGACAGUUGGGAUUCCGAA------UCUUCCAAAAGGGAAACCACUCGUGCAACCUGAGUUGACACCUGCACCAAUC ....((((((((.....(((...---.(..(((((.((.....))..)))))..).......------..........((....))....))).....)))))))).............. ( -20.60) >DroYak_CAF1 5040 115 - 1 UCAUUUAAU-----UCACACAUUCAUCAUUGAACUCCAAGUUCUGCCAGUUUGGAAUCCAAAUCCAAGUCUUCCAAAAGGGAAACCACUCAUGCAACCUGAGUUUACACCUGCACCAAUC .........-----...............(((((((...((..(((...(((((((..(........)..))))))).((....))......)))))..))))))).............. ( -19.20) >consensus CCAUUCAAUUCA_UUCACACACUCAUCUUUCAACUCCAAGUUCUGCCAGUUGGGAAUCCGAA______UCUUCCAAAAGGGAAACCACUCGUGCAACCUGAGUUGACACCUGCACCAAUC .............................(((((((...(((.(((.(((..(((................)))....((....))))).))).)))..))))))).............. (-14.72 = -15.09 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:36 2006