Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,863,564 – 3,863,684 |
Length | 120 |
Max. P | 0.718880 |
Location | 3,863,564 – 3,863,684 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.82 |
Mean single sequence MFE | -40.78 |
Consensus MFE | -35.03 |
Energy contribution | -35.52 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.86 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3863564 120 + 27905053 UGGCGCGGUGCGGUUCAGUGUGGUGCAACACAGUUGGUGCCGCCCAAUUUGUCCCGUGGAAAUCGAAAGCCGAUUUUCAUGUCAAUAUUUUUGUUUAAUAAACUGGCCGACUCGAGUCGU .(((.(((((((((((((((((......)))).)))).))))).....(((...(((((((((((.....))))))))))).)))................)))))))(((....))).. ( -39.10) >DroSec_CAF1 4624 119 + 1 UGGCGCGGUGCGGUUCAGUGUGGUGCAACGCAGU-GGUGCCGCACAAUUUGUCCCGUGGAAAUCGAAAGCCGAUUUUCAUGUCAAUAUUUUUGUUUAAUAAACUGGCCGACUGGAGUCGU .(((.((((((((((((.((((......)))).)-)).)))))((((..(((..(((((((((((.....)))))))))))...)))...)))).......)))))))(((....))).. ( -42.70) >DroSim_CAF1 6075 119 + 1 UGGCGCGGUGCGGUUCAGUGUGGUGCAACGCAGU-GGUGCCGCACAAUUUGUCCCGUGGAAAUCGAAAGCCGAUUUUCAUGUCAAUAUUUUUGUUUAAUAAACUGGCCGACUGGAGUCGU .(((.((((((((((((.((((......)))).)-)).)))))((((..(((..(((((((((((.....)))))))))))...)))...)))).......)))))))(((....))).. ( -42.70) >DroYak_CAF1 4444 117 + 1 UGGCGCGGAGCGUUUCAGUGUGGUGCAAC--AGU-GGUGCCGCACAAUUUGUCCCGUGGAAAUCGAAAGCCGAUUUUCAUGUCAAUAUUUUUGUUUAAUAAACUGGACGACUCAAGUCGU .(((...(((.......((((((..(...--...-.)..))))))...(((((((((((((((((.....))))))))))).(((.....)))...........)))))))))..))).. ( -38.60) >consensus UGGCGCGGUGCGGUUCAGUGUGGUGCAACGCAGU_GGUGCCGCACAAUUUGUCCCGUGGAAAUCGAAAGCCGAUUUUCAUGUCAAUAUUUUUGUUUAAUAAACUGGCCGACUCGAGUCGU ((((((((..(((....((((((..(..........)..))))))...)))..))))((((((((.....))))))))..)))).......................((((....)))). (-35.03 = -35.52 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:35 2006