Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,858,053 – 3,858,173 |
Length | 120 |
Max. P | 0.560488 |
Location | 3,858,053 – 3,858,173 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.72 |
Mean single sequence MFE | -36.93 |
Consensus MFE | -27.39 |
Energy contribution | -27.45 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.37 |
Mean z-score | -1.47 |
Structure conservation index | 0.74 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3858053 120 + 27905053 CACUCCGGCAAAGAUAAAGGCCAGCAGGACCAUGUCAGUCUGGCCUGAUAUUCUGUUGGUCUCCCUUUGCACUUUUAUUCGAUCGUAUUUGGCCUGGGCGGCUUGUCUCCGGUCAAAUGA .......((((((....((((((((((((...((((((......))))))))))))))))))..))))))...............(((((((((.(((.((....)))))))))))))). ( -42.30) >DroSec_CAF1 16077 120 + 1 CACUCCGGCAAAGAUAAAGGCCAGCAGGACCAUGUCAGUCUGGCCUGAUAUCUUGUUGGUUUCUCUUUGCACCUUAAUUCGAUCGUAUUUGGCCUGAGCGGCUUGUCUCCGGUCAAAUGA .......(((((((...((((((((((((...((((((......)))))))))))))))))).)))))))...............(((((((((.((((.....).))).))))))))). ( -42.10) >DroSim_CAF1 16559 120 + 1 CACUCCGGCAAAGAUAAAGGCCAGCAGGACCAUGUCAGUCUGGCCUGAUAUCUUGUUGGUUUCCCUUUGCACCUUAAUUCGAUCGUAUUUGGCCUGGGCGGCUUGUCUUCGGUCAAAUGA .......((((((....((((((((((((...((((((......))))))))))))))))))..))))))...............(((((((((.((((.....))))..))))))))). ( -40.00) >DroEre_CAF1 16337 120 + 1 UACUCCGGCAAAGAUAAAGGACAGCAAGACAAUGUCUGUCUGGCCUGACAUCUUGUUGGUCUCUUUUUGCACCUUAAUUCGAUCGUAUUUGGCCUGGGCGGCCUGUCUCCGGUCAAAUGA .......(((((((...((..((((((((...((((..........))))))))))))..)).)))))))..........(((((.....((((.....))))......)))))...... ( -34.20) >DroWil_CAF1 19180 120 + 1 CACGGCGGCAAAAAUGAAGGCAAUCAUCACAGUAUCCGUCUGCUUGGAUAUGCUAUUCUGCUCCUUUUGCACUCGAAUCCUUUCGUAUUUGGCCUGGGCCGUCUGGCGACGUUCAAAAUU ..(((.(.((((.(((((((...((......(((((((......))))))).......(((.......)))...))...))))))).)))).))))(..((((....))))..)...... ( -29.80) >DroYak_CAF1 22203 120 + 1 UAUUCCGGCAAAGAUAAACGCCAGCAAGACCAUGUCUGUCUCACCUGACAUCUUGUUGCUCUCCUUUUGCACCUUAAUUCGGUCAUAUUUGGCCUGGGCGGCCUGUCUCCGGUCAAAUGA ....((((...(((((..(((((((((.(..(((((..........)))))..).)))))....................(((((....)))))..))))...)))))))))........ ( -33.20) >consensus CACUCCGGCAAAGAUAAAGGCCAGCAGGACCAUGUCAGUCUGGCCUGAUAUCUUGUUGGUCUCCCUUUGCACCUUAAUUCGAUCGUAUUUGGCCUGGGCGGCCUGUCUCCGGUCAAAUGA .......((((((....(((.((((((((...((((((......)))))))))))))).)))..))))))...............(((((((((.(((........))).))))))))). (-27.39 = -27.45 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:32 2006