Locus 131

Sequence ID 3R_DroMel_CAF1
Location 706,414 – 706,504
Length 90
Max. P 0.954654
window213

overview

Window 3

Location 706,414 – 706,504
Length 90
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 78.18
Mean single sequence MFE -23.43
Consensus MFE -17.74
Energy contribution -17.77
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -2.01
Structure conservation index 0.76
SVM decision value 1.45
SVM RNA-class probability 0.954654
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 706414 90 + 27905053
AAGGUGUUGGAUAAAACAUAAAGUUCGUGUGAAUGCCGACACGUUGUGACAAUUGUUUGACAACAAC----GGCCGC---AGAACG-------AGCA-CAA---AAGA
...(((((......)))))...((((((.....(((.(...((((((..(((....)))...)))))----).).))---)..)))-------))).-...---.... ( -23.30)
>DroVir_CAF1 157144 76 + 1
GAGGUGUUG-ACAAAACAUAAAGUUCGUGUGAAUGCCAACACGUUGUGACAAUUGUUUGACAACAAU----AACAGC---AACA------------------------
...((((((-.((..((((.......))))...)).))))))(((((....((((((....))))))----....))---))).------------------------ ( -19.20)
>DroPse_CAF1 130891 97 + 1
GAGGUGUUGGAUAAAACAUAAAGUUCGUGUGAAUGCCGACACGUUGUGACAAUUGUUUGACAACAGC----AACAAUAAGGGAACA-------AGCGACAAGCGCAGA
...(((((((.....((((.......)))).....)))))))((((((((....)))..))))).((----........(....).-------.((.....))))... ( -23.40)
>DroYak_CAF1 136828 96 + 1
AAGGUGUUGGAUAAAACAUAAAGUUCGUGUGAAUGCCGACACGUUGUGACAAUUGUUUGACAACAAC----GGCCGC---AA-ACGGCUUUUGAGCA-CAA---AAGA
...(((((((.....((((.......)))).....))))))).(((((.(((....)))....(((.----(((((.---..-.))))).)))..))-)))---.... ( -27.50)
>DroAna_CAF1 126682 95 + 1
GAGGUGUUGGAUAAAACAUAAAGUUCGUGUGAAUGCCGACACGUUGUGACAAUUGUUUGACAACAGCCGAGAGUCGG---AGAACG-------AACAACCA---UGGA
..((((((......))).....((((((.......(((((.((((((..(((....)))...)))))...).)))))---...)))-------))).))).---.... ( -23.80)
>DroPer_CAF1 131055 97 + 1
GAGGUGUUGGAUAAAACAUAAAGUUCGUGUGAAUGCCGACACGUUGUGACAAUUGUUUGACAACAGC----AACAAUAAGGGAACA-------AGCGACAAGCGCAGA
...(((((((.....((((.......)))).....)))))))((((((((....)))..))))).((----........(....).-------.((.....))))... ( -23.40)
>consensus
GAGGUGUUGGAUAAAACAUAAAGUUCGUGUGAAUGCCGACACGUUGUGACAAUUGUUUGACAACAAC____AACAGC___AGAACG_______AGCA_CAA___AAGA
...(((((((.....((((.......)))).....)))))))((((((((....)))..)))))............................................ (-17.74 = -17.77 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:59 2006