Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,852,458 – 3,852,551 |
Length | 93 |
Max. P | 0.654480 |
Location | 3,852,458 – 3,852,551 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 75.32 |
Mean single sequence MFE | -20.35 |
Consensus MFE | -13.92 |
Energy contribution | -13.87 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -1.09 |
Structure conservation index | 0.68 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3852458 93 - 27905053 AACUUUGCACGCACGCCGCAAUUUCUGCGCAAAGUUAUCUCCGAGGCGCGCAGGUAAUUUCG------GGAAAAAAACAAAAACA------AA-GCUGGAGGGUGG .(((((.((.((...(((.(((((((((((...(((........)))))))))).)))).))------)(.......).......------..-)))).))))).. ( -21.00) >DroVir_CAF1 10722 93 - 1 AACUUUGCACGCACGCCGCAGUUUCUGCGCAAAGUCAUCAACGAGGCGCGCAGGUAAAUAAAUUUGCCCGCAACCGACAACAAUU------AAAACAAA------- ....((((..((.((((((((...))))......((......)))))).)).((((((....)))))).))))............------........------- ( -23.40) >DroPse_CAF1 13002 97 - 1 AACUUUGCACGCACGCCGCAAUUUCUGCGCAAAGUUAUCAACGAGGCGCGCAGGUAAAACAA------A--AAACAACAAUAUCAAACACCAA-ACAUAUAGGUGG ...(((((..((.(((((((.....))).....((.....))..)))).))..)))))....------.--................((((..-.......)))). ( -21.00) >DroGri_CAF1 9957 93 - 1 AACUUUGCACGCACACCGCAAUUUCUGCGCAAAGUCAUCAACGAGGCGCGCAGGUAAAUAAAUCUGGCUGCAACAGACAAAAACA------AAUGCAGA------- ...((((((.((.....))....(((((((...((.....))...))))((((.((........)).))))...)))........------..))))))------- ( -21.10) >DroYak_CAF1 11050 93 - 1 AACUUUGCACGCACGCCGCAAUUUCUGCGCAAAGUUAUCUUCGAGGCGCGCAGGUAAAUUUA------GGAAGAAAACAAAAACA------AA-GCAGGAGGGUGG ..((((((..((.(((((((.....))).(.(((....))).).)))).))...........------(........).......------..-))).)))..... ( -17.20) >DroPer_CAF1 13051 96 - 1 AACUUUGCACGCACGCCGCAAUUUCUGCGCAAAGUUAUCAACGAGGCGCGCAGGUAAAAUAA---------AAACAACAAUAUCAAACAUCAA-ACAUAUAGGUGG ...(((((..((.(((((((.....))).....((.....))..)))).))..)))))....---------................((((..-.......)))). ( -18.40) >consensus AACUUUGCACGCACGCCGCAAUUUCUGCGCAAAGUUAUCAACGAGGCGCGCAGGUAAAUUAA______GG_AAAAAACAAAAACA______AA_ACAGA__GGUGG ...(((((..((.....)).....((((((...(((........))))))))))))))................................................ (-13.92 = -13.87 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:28 2006