Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,849,859 – 3,849,966 |
Length | 107 |
Max. P | 0.671773 |
Location | 3,849,859 – 3,849,966 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.74 |
Mean single sequence MFE | -42.92 |
Consensus MFE | -22.83 |
Energy contribution | -22.75 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.38 |
Mean z-score | -1.55 |
Structure conservation index | 0.53 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3849859 107 + 27905053 -------GCUUGUC---CCUGUUUCUUUUUGCUUGUUGCCGC---UUCUGCCAGUUGUUGAGUAUAGGCUAGAAGUGUUCCCAGCAGCUGAGCUACCGCACAUCGCACUUCAUAGUUGCU -------....((.---.((((........((((((((((((---(((((((.((........)).))).)))))))......))))).))))....((.....)).....))))..)). ( -25.90) >DroVir_CAF1 8254 114 + 1 AGCCUGGGCUUGAG---CGGACUUCUUGUUGC---UCGCCGCCAGCUCGGCCAGCUGCUGUGUGUAGGCGAGCAGUGUGCCCAGCAGCUGGGCAACAGCGCAGCGCACCUCAUAGUUGCU .(((((.(((.(((---((.((.....)))))---))((((((.....)))(((((((((.(.(((.((.....)).))))))))))))))))...))).))).)).............. ( -51.10) >DroGri_CAF1 7338 109 + 1 --CGGGCGCUUGGG---CGGCUUUCUUGUUGU---UCGCCGC---CUCGGCCAACUGUUGGGUGUAGGCGAGCAGCGUGCCCAGCAGCUGGGCAACUGCGCAACGCACCUCAUAAUUGCU --.(((((.(((.(---(((.......(((((---(((((((---((((((.....)))))).)).)))))))))).(((((((...))))))).)))).)))))).))........... ( -51.80) >DroWil_CAF1 6932 107 + 1 -------GCUUGAUUUGCCAUCUUCUUAUUGC---UGGCCAU---CUCCGCCAGCUGUUGGGUAUAGGCUAGCAAAGUGCCCAAUAGCUGAGCAACUGCACAACGCACUUCGUAAUUACU -------(((((....((((.(........).---))))...---....((((((((((((((((..(....)...)))))))))))))).)).......))).)).............. ( -34.70) >DroAna_CAF1 6915 107 + 1 -------GCCUGGG---UCUGUUUCUUCUUCCCAGUGGCCAG---CUCAGCCAGUUGCUGGGUGUACGCCAGAAGAGUGCCCAGGAGCUGGGCCACGGCGCAGCGCACCUCGUAGUUGCU -------(((((((---...(......)..))))((((((.(---(...))(((((.(((((..(.(.......).)..))))).))))))))))))))(((((((.....)).))))). ( -47.10) >DroPer_CAF1 9865 104 + 1 -------GUCUGAU---UGG---CCUUCUUGUUUAGGGCCGC---CUCCGCCAGCUGCUGGGUGUAGGCCAGGAGCGUGCCCAGCAGCUGGGCCACAGCGCAGCGCACCUCGUAGUUGCU -------(.(((..---.((---((((.......))))))..---.....((((((((((((..(..((.....)))..))))))))))))....))))(((((((.....)).))))). ( -46.90) >consensus _______GCUUGAG___CCGGUUUCUUCUUGC___UGGCCGC___CUCCGCCAGCUGCUGGGUGUAGGCCAGCAGAGUGCCCAGCAGCUGGGCAACAGCGCAGCGCACCUCAUAGUUGCU .......(((((......................................((((((((((((((.............))))))))))))))((....)).))).)).............. (-22.83 = -22.75 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:27 2006