Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,835,027 – 3,835,161 |
Length | 134 |
Max. P | 0.844097 |
Location | 3,835,027 – 3,835,147 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.85 |
Mean single sequence MFE | -40.98 |
Consensus MFE | -35.00 |
Energy contribution | -36.12 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.05 |
Mean z-score | -1.78 |
Structure conservation index | 0.85 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3835027 120 + 27905053 UAGCCUUUUUUAAAUCGUCGGUCGACCCGAUCAGUCUGGUUCGGGCUAUCGGGGCAUGUAAGGGUCACCCUGUGUUCAAGGCGGUUCGUUGGAACCAGUUCCGAACUGUCUUUGAACAAA ..(((...........(((....)))(((((.((((((...)))))))))))))).....((((...)))).(((((((((((((((...((((....)))))))))).))))))))).. ( -44.70) >DroSim_CAF1 7507 119 + 1 UAGCCUU-UUAAAAUCGUCGGUCGAGCCGAUAAGUCUGGUUUGGGAUAUCGGGGCGUGUAAGGGUCACCCUGUGUUCAAGGCGGUUCGUUGGAACCAGUUCCGACCUGUCUUUGAACAAA ..(((..-......(((.....))).((((((..((......))..))))))))).....((((...)))).((((((((((((...(((((((....)))))))))).))))))))).. ( -39.10) >DroEre_CAF1 10136 119 + 1 UAGCCUU-GUAUAAUCGUAGAUCGACCCGAUAAGUCAAGUUCGGGCUAUCGGGGCAUCUAGGGGUCACCCUGUGUUCAAGGCGGUUCGUUGGAACCAGUUCCGACCUGUCUUUGAACAAA ..(((((-(.(((.(((.....)))(((((..........))))).)))))))))...(((((....)))))((((((((((((...(((((((....)))))))))).))))))))).. ( -45.10) >DroYak_CAF1 8859 120 + 1 UAGCCUUUUUAUAAUCGUAGAUCGACCUGAUAAGUAUAGUCUGGGCUAUCGGGGCAUCUAAGAGUCACCCUGUGCUCAAGGCGGUUCGUUGGAACCAGUUCCGACCUGGCUUUGAACAAA ((((((..(((((....(((......))).....)))))...)))))).(((((...(.....)...)))))((.(((((((.(...(((((((....))))))).).))))))).)).. ( -35.00) >consensus UAGCCUU_UUAAAAUCGUAGAUCGACCCGAUAAGUCUAGUUCGGGCUAUCGGGGCAUCUAAGGGUCACCCUGUGUUCAAGGCGGUUCGUUGGAACCAGUUCCGACCUGUCUUUGAACAAA ..(((.........(((.....))).(((((.(((((.....))))))))))))).....((((...)))).((((((((((((...(((((((....)))))))))).))))))))).. (-35.00 = -36.12 + 1.12)
Location | 3,835,067 – 3,835,161 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 93.26 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -26.03 |
Energy contribution | -26.59 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.63 |
Structure conservation index | 0.85 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659415 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3835067 94 + 27905053 UCGGGCUAUCGGGGCAUGUAAGGGUCACCCUGUGUUCAAGGCGGUUCGUUGGAACCAGUUCCGAACUGUCUUUGAACAAAACAAAAUCACCCAG ..(((....(((((..((.......)))))))(((((((((((((((...((((....)))))))))).)))))))))...........))).. ( -31.80) >DroSim_CAF1 7546 94 + 1 UUGGGAUAUCGGGGCGUGUAAGGGUCACCCUGUGUUCAAGGCGGUUCGUUGGAACCAGUUCCGACCUGUCUUUGAACAAAACAAAAUCAUCCAG ...((((..(((((.(.........).)))))((((((((((((...(((((((....)))))))))).)))))))))..........)))).. ( -31.80) >DroEre_CAF1 10175 94 + 1 UCGGGCUAUCGGGGCAUCUAGGGGUCACCCUGUGUUCAAGGCGGUUCGUUGGAACCAGUUCCGACCUGUCUUUGAACAAAACAAAAUCAUACAG ....(((.....)))...(((((....)))))((((((((((((...(((((((....)))))))))).)))))))))................ ( -30.00) >DroYak_CAF1 8899 94 + 1 CUGGGCUAUCGGGGCAUCUAAGAGUCACCCUGUGCUCAAGGCGGUUCGUUGGAACCAGUUCCGACCUGGCUUUGAACAAAACAAAAUCAUCCAG ((((((...(((((...(.....)...))))).))(((((((.(...(((((((....))))))).).)))))))...............)))) ( -29.40) >consensus UCGGGCUAUCGGGGCAUCUAAGGGUCACCCUGUGUUCAAGGCGGUUCGUUGGAACCAGUUCCGACCUGUCUUUGAACAAAACAAAAUCAUCCAG ..(((....(((((.............)))))((((((((((((...(((((((....)))))))))).)))))))))...........))).. (-26.03 = -26.59 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:24 2006