Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,822,656 – 3,822,776 |
Length | 120 |
Max. P | 0.552893 |
Location | 3,822,656 – 3,822,776 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.83 |
Mean single sequence MFE | -34.06 |
Consensus MFE | -32.16 |
Energy contribution | -32.56 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.11 |
Structure conservation index | 0.94 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552893 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3822656 120 - 27905053 AUACAUAUUCAUCGUCUCCCCCGCCGACUGUUUGCACAUGUAAAUUUGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAGAUCUUGUGCUCGGCGG ....................(((((((......((((((((((.((((((...))))))))))))((((..((..(((..((((.....))))..))).))..))))..))))))))))) ( -34.00) >DroSec_CAF1 50387 120 - 1 AUACAUAUUCAUCGUCUCCCCCGCCGACUGUUUGCACAUGUUAAUUUGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAUAUCUUGUGCUCGGCGG ....................((((((((((...((.(((((.((((((((...))))))))))))))))))....(((..((((.....))))..)))...............))))))) ( -33.20) >DroSim_CAF1 54983 120 - 1 AUACAUAUUCAUCGUCUCCCCCGCCGACUGUUUGCACAUGUUAAUUUGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAUAUCUUGUGCUCGGCGG ....................((((((((((...((.(((((.((((((((...))))))))))))))))))....(((..((((.....))))..)))...............))))))) ( -33.20) >DroEre_CAF1 41757 120 - 1 AUACAUAUUUAUCGUCUCCCCCGCCGACUGUUUGCACAUGUAAAUUCGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAGAUCUUGUGCUCGGCGG ............((((...((((((((..((((((....)))))))))))).))...((.((((.((((..((..(((..((((.....))))..))).))..)))).)))).)))))). ( -35.30) >DroYak_CAF1 56111 120 - 1 AUACAAAAUCAUCUUCUCCCCCGCCGACUGUUUGCGCAUGUAAAUUCGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAGAUCUUGUGCUCGGCGG ....................((((((((((.((((((.((......)))))))).)))..((((.((((..((..(((..((((.....))))..))).))..)))).)))).))))))) ( -34.60) >consensus AUACAUAUUCAUCGUCUCCCCCGCCGACUGUUUGCACAUGUAAAUUUGGCGCGGCUAGAUUACAUGGUCAGUUACGUGUUAUUCGGUUAGAAUUCCGCAAAAAGAUCUUGUGCUCGGCGG ....................((((((((((...((.(((((.((((((((...))))))))))))))))))....(((..((((.....))))..)))...............))))))) (-32.16 = -32.56 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:12 2006