Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,821,885 – 3,821,998 |
Length | 113 |
Max. P | 0.602306 |
Location | 3,821,885 – 3,821,998 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.46 |
Mean single sequence MFE | -42.22 |
Consensus MFE | -31.54 |
Energy contribution | -32.50 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.12 |
Mean z-score | -1.65 |
Structure conservation index | 0.75 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3821885 113 - 27905053 AACUUUGAACUGUGCAAUCAUGCGCGCUGCCAAGACGCG-------GCAAAAGUACCGCUCCGAUAUUUGGAUUGGCGGCAAUUAGCGCCGCACUUGGGUGUGGGUGCAAAGGCGGGUGA .................((((.(((((((((((...(((-------(........))))(((((...))))))))))))).....(((((((((....)))).)))))....))).)))) ( -45.80) >DroSec_CAF1 49628 113 - 1 AACUUUGAACUGUGCAAUCAUCGGCGCUGCCAAGACGCC-------GCAAAAGUACCGCUCCGAUAUUUGGAUUGGCGGCAAUUAGCGCCGCACUUGGGUGUGGGUGCAAAGGCAGGUGA .................(((((.((((((((((......-------((.........))(((((...))))))))))))).....(((((((((....)))).)))))....)).))))) ( -37.40) >DroSim_CAF1 54192 113 - 1 AACUUUGAACUGUGCAAUCAUCGGCGCGGCCAAGACGCG-------GCAAAAGUACCGCACCGAUAUUUGGAUUGGCGGCAAUUAGCGCCGCACUUGGGUGUGGGUGCAAAGGCAGGUGA .................(((((.((((.(((((...(((-------(........)))).((((...)))).))))).)).....(((((((((....)))).)))))....)).))))) ( -40.90) >DroEre_CAF1 40944 113 - 1 AACUUUGAACUGUGCCAUCAUCCGCGCUGCCAAGACGAC-------GCAAAAGUAGCCCUCCGAUACUGGGAUGGGCGGCAAUUAGCGCCGCGCUUCGGUGUGGGUGCAAAGCCAGGUGA .((((.(...((..((.......((((((((......((-------......)).(((((((.......))).)))))))....)))))(((((....)))))))..))...).)))).. ( -42.30) >DroYak_CAF1 55313 120 - 1 AACUUUGAACUGUGCAAUCAUCCGCGCUGCCAAGACGACAGACAAGGUAAAAGUACCGCUCUGAUAUUUGGAUUGGCGGCAAUUAGCGCCACACUGGCCUGUGGGUGCAAAGGCAGGUGA .................(((((.((((((((((..(((((((...((((....))))..))))....)))..)))))))).....(((((.(((......))))))))....)).))))) ( -44.70) >consensus AACUUUGAACUGUGCAAUCAUCCGCGCUGCCAAGACGCC_______GCAAAAGUACCGCUCCGAUAUUUGGAUUGGCGGCAAUUAGCGCCGCACUUGGGUGUGGGUGCAAAGGCAGGUGA .................(((((.((((((((((..(((........))..(((((.(.....).))))))..)))))))).....(((((((((....)))).)))))....)).))))) (-31.54 = -32.50 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:11 2006