Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 702,402 – 702,519 |
Length | 117 |
Max. P | 0.983598 |
Location | 702,402 – 702,519 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 83.76 |
Mean single sequence MFE | -36.58 |
Consensus MFE | -28.10 |
Energy contribution | -29.98 |
Covariance contribution | 1.87 |
Combinations/Pair | 1.21 |
Mean z-score | -2.61 |
Structure conservation index | 0.77 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983598 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 702402 117 - 27905053 AGUAUAUAAGCUUCGGCUUGCCGAAGAUUGCUUCCAUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUGGAUAAGCAAGAGCUUGUCCAUGAAGGUGGAUCAGAUGCA .((((.....((((((....)))))).(((..(((((..((.............((((((((...))))))))..((((((((((....))))))))))))..))))).))))))). ( -41.10) >DroSec_CAF1 121778 117 - 1 AGUACAUAAGCUUCGGCUUGCCGAAGAUAGCUUCCUUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUAGAUAAGCAAGAGAUGAGCCACGGAGGUGGGUCAGACGCA ..........((((((....))))))...((.((.((((((((((((((...((.(((((((...)))))))))...))))))))))))))(((.((((....)))).))))).)). ( -44.00) >DroSim_CAF1 123970 117 - 1 AGUAUAUAAGCUUCGGCUUGCCGAAGAUAUCUUCCUUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUAGAUAAGCAAGAGAUGAGCCACGGAGGUGGGUCAGAUGCA .((((.(((((....)))))..((((....)))).((((((((((((((...((.(((((((...)))))))))...))))))))))))))(((.((((....)))).))).)))). ( -43.40) >DroYak_CAF1 132388 115 - 1 AGUAUAUAAUCUUCGGCUUUCCGCAGCUAGCUUCCUUUCCGAUUUUUUUU--AAUAUGCUCUUCAGCACUAUGUUAUAGGUGAACAAGACUUGAUGCACGAGGGUGGACCAGACGUA .........(((((.((((((.(((...(((((..((.((.........(--((((((((....))))...)))))..)).))..))).))...)))..)))))).))..))).... ( -17.80) >consensus AGUAUAUAAGCUUCGGCUUGCCGAAGAUAGCUUCCUUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUAGAUAAGCAAGAGAUGAGCCACGAAGGUGGAUCAGACGCA ..........((((((....))))))...((.((...((((((((((((.....((((((((...))))))))....))))))))))))..((((((((....)))))))))).)). (-28.10 = -29.98 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:58 2006