Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 158,967 – 159,072 |
Length | 105 |
Max. P | 0.743309 |
Location | 158,967 – 159,072 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.43 |
Mean single sequence MFE | -39.13 |
Consensus MFE | -26.76 |
Energy contribution | -28.43 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.22 |
Mean z-score | -1.83 |
Structure conservation index | 0.68 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.743309 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 158967 105 - 27905053 AAUAUGGAAUUCCGCCUAACUCGUUUCCACCUCAGGGACCG------GGGUACGGUAUUCCAGGUGCCCCGCCGGACCAAAGCUCUUUUGGCUCUGGCUACGGUCCGCCUC ....(((((...((.......)).)))))......((((((------((((((((....))..)))))))((((((((((((...)))))).))))))...)))))..... ( -41.70) >DroSec_CAF1 7891 105 - 1 AAUAUGGAAUGCCGCCUGGCUCGUUUCCACCUCAGGGACCG------GGGUACGGUAUUCCAGGUCCUCCGCCUGACCAAAGCUCUUUUGGCUCUGGCUAUGGUCCGCCUC ....((((((((((..((.((((.((((......)))).))------)).))))))))))))((.((...(((.((((((((...)))))).)).)))...)).))..... ( -42.00) >DroSim_CAF1 8775 105 - 1 AAUAUGGAAUGCCGCCUGGCUCGUUUCCACCUCAGGGACCG------GGGUACGGUAUUCCAGGUCCUCCGCCUGACCAAAGCUCUUUUGGCUCUGGCUAUGGUCCGCCUC ....((((((((((..((.((((.((((......)))).))------)).))))))))))))((.((...(((.((((((((...)))))).)).)))...)).))..... ( -42.00) >DroEre_CAF1 8262 105 - 1 AAUACGGAUUGCCGCCUGGCUCGUUUCCACCUCCGGAACCG------GGGUACGGCAUACCAGGUCCCCCGCCUGACCAAAGCGCUUUUGGCUCUGGCUAUGGUCCGCCUC .....((..(((((..((.((((.((((......)))).))------)).)))))))..)).((.((...(((.((((((((...)))))).)).)))...)).))..... ( -36.70) >DroYak_CAF1 7227 105 - 1 AGUACGGAAUGCCGCCUGGCUCGUUUCCACCUCAUGAACCG------GUGUACGGCAUGCCAGGUCCCCCGCCUGACCACAGCACUUUUGGGUCUGGCUAUGGUCCGCCCC .(..(((...((((((((((((((...((((.........)------))).))))...))))))).....(((.((((.(((.....))))))).)))...))))))..). ( -37.30) >DroAna_CAF1 7464 108 - 1 AGUAUGGUAUGCCAGCCAACGCGUUUCCACCACAGGGACCGCAACCAGGAUAUGUAAUGCCAGGUCCCA---CUGGUCAGCCCAAUUUCGGAGCUCCCUAUGGGCCACCAC ....((((((..((.((...(((.((((......)))).))).....))...))..))))))((.((((---..((..(((((......)).))).))..))))))..... ( -35.10) >consensus AAUAUGGAAUGCCGCCUGGCUCGUUUCCACCUCAGGGACCG______GGGUACGGUAUUCCAGGUCCCCCGCCUGACCAAAGCUCUUUUGGCUCUGGCUAUGGUCCGCCUC .....((((((((((((....((.((((......)))).))......)))..))))))))).((.((...(((.(((((((.....))))).)).)))...)).))..... (-26.76 = -28.43 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:13 2006