Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,820,074 – 3,820,227 |
Length | 153 |
Max. P | 0.999313 |
Location | 3,820,074 – 3,820,194 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -38.54 |
Consensus MFE | -30.87 |
Energy contribution | -32.95 |
Covariance contribution | 2.08 |
Combinations/Pair | 1.03 |
Mean z-score | -2.36 |
Structure conservation index | 0.80 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3820074 120 + 27905053 AGUAGCGGCGGCGAUUGGUUAACCCACUGGGGUUUUUUCUCUCGAAUUUGCAGAGCUGCUGAAUGAAUAUGAAAAUCACUGGAUUUCUACACAGCAGCAGCAUCUGCAAUGAUGGGCCGA .....((((..(((..((..(((((....)))))...))..)))...((((((((((((((.........((((.((....)))))).......))))))).)))))))......)))). ( -41.69) >DroSec_CAF1 47847 116 + 1 AGCGGCG---GCGAUUGGUUAACCCACUGGGGUUUUUUCUCUCGAAUUUGCAGAGCUGCUGAAUGAAUAUGAAAAUCACUGGAUUUCUACAC-CCAGCAGCAUCUGCAAUGAUGGGCCGA ..((((.---.(((..((..(((((....)))))...))..)))...((((((((((((((..((.....((((.((....))))))..)).-.))))))).)))))))......)))). ( -41.40) >DroSim_CAF1 52434 119 + 1 AGCGGCGGUGGCGAUUGGUUAACCCACUGGGGUUUUUUCUCUCGAAUUUGCAGAGCUGCUGAAUGAAUAUGAAAAUCACUGGAUUUCUACAC-CCAGCAGCAUCUGCAAUGAUGGGCCGA ..((((.....(((..((..(((((....)))))...))..)))...((((((((((((((..((.....((((.((....))))))..)).-.))))))).)))))))......)))). ( -41.40) >DroEre_CAF1 39260 105 + 1 -----------CGAUUGGUUAACCCACUGGGGUUUUUUCUCUCGAAUUUGCAGAGC---UGAAUGAAUAUGAAAAUCACUGGAUUUCUACAC-CCAGCAGCAUCUGCAAUGAUGGGCCAA -----------...(((((((((((....))))).............(((((((((---((........((.....))((((..........-)))))))).))))))).....)))))) ( -28.60) >DroYak_CAF1 51654 116 + 1 CGCGGCAGCGUCGAUUGGUUAACCCACUGGGGUUUUUUCUCUCGAAUUUGCAGAGC---UGAAUGAAUAUGAAAAUCACUGGAUUUCUACAC-CCAGCAGCAUCUGCAAUGAUGUGCCGA ..(((((.((((((..((..(((((....)))))...))..))....(((((((((---((........((.....))((((..........-)))))))).))))))).))))))))). ( -39.60) >consensus AGCGGCGG_GGCGAUUGGUUAACCCACUGGGGUUUUUUCUCUCGAAUUUGCAGAGCUGCUGAAUGAAUAUGAAAAUCACUGGAUUUCUACAC_CCAGCAGCAUCUGCAAUGAUGGGCCGA ..((((.....(((..((..(((((....)))))...))..)))...((((((((((((((.........((((.((....)))))).......))))))).)))))))......)))). (-30.87 = -32.95 + 2.08)
Location | 3,820,074 – 3,820,194 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -41.52 |
Consensus MFE | -33.84 |
Energy contribution | -35.44 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -4.01 |
Structure conservation index | 0.82 |
SVM decision value | 3.50 |
SVM RNA-class probability | 0.999313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3820074 120 - 27905053 UCGGCCCAUCAUUGCAGAUGCUGCUGCUGUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCAGCAGCUCUGCAAAUUCGAGAGAAAAAACCCCAGUGGGUUAACCAAUCGCCGCCGCUACU .((((......(((((((.(((((((..((((..(((((....)))))..)))).....)))))))))))))).(((....)))..(((((....)))))........))))........ ( -41.30) >DroSec_CAF1 47847 116 - 1 UCGGCCCAUCAUUGCAGAUGCUGCUGG-GUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCAGCAGCUCUGCAAAUUCGAGAGAAAAAACCCCAGUGGGUUAACCAAUCGC---CGCCGCU .((((......(((((((.((((((((-(((..((((((....))))))......)))))))))))))))))).(((....)))..(((((....)))))........))---))..... ( -43.70) >DroSim_CAF1 52434 119 - 1 UCGGCCCAUCAUUGCAGAUGCUGCUGG-GUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCAGCAGCUCUGCAAAUUCGAGAGAAAAAACCCCAGUGGGUUAACCAAUCGCCACCGCCGCU .((((......(((((((.((((((((-(((..((((((....))))))......)))))))))))))))))).(((....)))..(((((....)))))..............)))).. ( -43.70) >DroEre_CAF1 39260 105 - 1 UUGGCCCAUCAUUGCAGAUGCUGCUGG-GUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCA---GCUCUGCAAAUUCGAGAGAAAAAACCCCAGUGGGUUAACCAAUCG----------- (((((((((..(((((((.((((.(((-((((..(((((....)))))..)))))))..))---))))))))).(((....))).........))))))))).......----------- ( -37.70) >DroYak_CAF1 51654 116 - 1 UCGGCACAUCAUUGCAGAUGCUGCUGG-GUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCA---GCUCUGCAAAUUCGAGAGAAAAAACCCCAGUGGGUUAACCAAUCGACGCUGCCGCG .((((((.((.(((((((.((((.(((-((((..(((((....)))))..)))))))..))---))))))))).(((....)))..(((((....)))))........)).).))))).. ( -41.20) >consensus UCGGCCCAUCAUUGCAGAUGCUGCUGG_GUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCAGCAGCUCUGCAAAUUCGAGAGAAAAAACCCCAGUGGGUUAACCAAUCGCC_CCGCCGCU ..(((((((..(((((((.((((((((.((((..(((((....)))))..))))....))))))))))))))).(((....))).........))))))).................... (-33.84 = -35.44 + 1.60)
Location | 3,820,114 – 3,820,227 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.30 |
Mean single sequence MFE | -33.54 |
Consensus MFE | -27.07 |
Energy contribution | -28.31 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.03 |
Mean z-score | -3.11 |
Structure conservation index | 0.81 |
SVM decision value | 2.93 |
SVM RNA-class probability | 0.997771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3820114 113 - 27905053 GACUCAUUUGUCCCGUCCACCUUACUUAU-------GCUUUCGGCCCAUCAUUGCAGAUGCUGCUGCUGUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCAGCAGCUCUGCAAAUUCGAG ..(((...((..(((..............-------.....)))..))...(((((((.(((((((..((((..(((((....)))))..)))).....))))))))))))))....))) ( -32.51) >DroSec_CAF1 47884 112 - 1 GACUCAUUUGUGCCGUCCACCUUACUUAU-------GCUUUCGGCCCAUCAUUGCAGAUGCUGCUGG-GUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCAGCAGCUCUGCAAAUUCGAG ..(((...((.((((..............-------.....)))).))...(((((((.((((((((-(((..((((((....))))))......))))))))))))))))))....))) ( -37.81) >DroSim_CAF1 52474 112 - 1 GACUCAUUUGUGCCGUCCACCUUACUUAU-------GCUUUCGGCCCAUCAUUGCAGAUGCUGCUGG-GUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCAGCAGCUCUGCAAAUUCGAG ..(((...((.((((..............-------.....)))).))...(((((((.((((((((-(((..((((((....))))))......))))))))))))))))))....))) ( -37.81) >DroEre_CAF1 39289 109 - 1 GGCUCGUUUGUCCCGUUCACCUUACUUAU-------GCUUUUGGCCCAUCAUUGCAGAUGCUGCUGG-GUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCA---GCUCUGCAAAUUCGAG ..((((..((..(((..............-------.....)))..))...(((((((.((((.(((-((((..(((((....)))))..)))))))..))---)))))))))...)))) ( -29.11) >DroYak_CAF1 51694 116 - 1 GACUCAUUUGUCCCGUCCUCUUUACUUACCUAUCCACCAUUCGGCACAUCAUUGCAGAUGCUGCUGG-GUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCA---GCUCUGCAAAUUCGAG ..(((...(((.(((..........................))).)))...(((((((.((((.(((-((((..(((((....)))))..)))))))..))---)))))))))....))) ( -30.47) >consensus GACUCAUUUGUCCCGUCCACCUUACUUAU_______GCUUUCGGCCCAUCAUUGCAGAUGCUGCUGG_GUGUAGAAAUCCAGUGAUUUUCAUAUUCAUUCAGCAGCUCUGCAAAUUCGAG ..(((...((..(((..........................)))..))...(((((((.((((((((.((((..(((((....)))))..))))....)))))))))))))))....))) (-27.07 = -28.31 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:59 2006