Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,818,116 – 3,818,227 |
Length | 111 |
Max. P | 0.535131 |
Location | 3,818,116 – 3,818,227 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -24.46 |
Consensus MFE | -21.32 |
Energy contribution | -21.32 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.14 |
Mean z-score | -1.18 |
Structure conservation index | 0.87 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535131 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3818116 111 - 27905053 CUCACUUACACUUACGCACAUUUAGCCAACCUGUUGAGUAUUUGCAGCUGUGCACUUGACUACUGGCUGAGUUUUUAGUUGCUGCAAAAACUGCUUUGCACUGAAAGAAAU .((................(((((((((....((..(((....(((....))))))..))...)))))))))(((((((.((.(((.....)))...)))))))))))... ( -27.60) >DroSec_CAF1 45980 111 - 1 CUCACUUACAUUUACGCACAUUUAGCCAACCUGUUGAGUAUUUGCAGCUGUGCACUUGACUACUGACUGAGUUUUUAGUUGCUGCAAAAACUGCUUAGCACUGACAAAAAA .(((...........((.......)).....(((((((((((((((((...((....((((........))))....)).))))))))...))))))))).)))....... ( -22.90) >DroSim_CAF1 50557 111 - 1 CUCACUUACACUUACGCACAUUUAGCCAACCUGUUGAGUAUUUGCAGCUGUGCACUUGACUACUGACUGAGUUUUUAGUUGCUGCAAAAACUGCUUAGCACUGAAAGAAAA ....(((.((.....((.......)).....(((((((((((((((((...((....((((........))))....)).))))))))...))))))))).)).))).... ( -23.90) >DroEre_CAF1 37457 105 - 1 CUCA----CACUUACGCACAUUUAGCCAACCUGCUGAGUACUUGCAGCUGUGCACUUGACUACUGACUGAGUUUUUAGUUGCUGCAA-AACUACUUGGCACUGAAAA-AAA ....----............(((((......(((..((((.(((((((...((....((((........))))....)).)))))))-...))))..))))))))..-... ( -24.30) >DroYak_CAF1 50124 109 - 1 CUCACUUACACUUACGCACAUUUAGCCAACCUGUUGAGUAUUUGCAGCUGUGCACUUGACUACUGACUGAGUUUUUAGUUGCUGCAAAAACUGUGUAGCACUGAAA--AAA ((((.(((.......((.......))......((..(((....(((....))))))..))...))).))))((((((((.((((((.......)))))))))))))--).. ( -23.60) >consensus CUCACUUACACUUACGCACAUUUAGCCAACCUGUUGAGUAUUUGCAGCUGUGCACUUGACUACUGACUGAGUUUUUAGUUGCUGCAAAAACUGCUUAGCACUGAAAAAAAA .(((...........((.......)).....(((((((((((((((((...((....((((........))))....)).))))))))...))))))))).)))....... (-21.32 = -21.32 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:53 2006